TreatCFM002035's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Endocytosis | 0.0005504 | KEGG pathway |
| L-lysine biosynthesis VI | 0.002686583 | plantCyc |
| diaminopimelate decarboxylase activity | 0.003148339 | GO:0008836 |
| rRNA (uridine-2'-O-)-methyltransferase activity | 0.003148339 | GO:0008650 |
| adenosine deaminase activity | 0.003148339 | GO:0004000 |
| inosine biosynthetic process | 0.006277827 | GO:0046103 |
| adenosine catabolic process | 0.006277827 | GO:0006154 |
| hypoxanthine salvage | 0.006277827 | GO:0043103 |
| endosome organization | 0.009413402 | GO:0007032 |
| cellular nitrogen compound biosynthetic process | 0.009413402 | GO:0044271 |
| enzyme-directed rRNA 2'-O-methylation | 0.009413402 | GO:0000453 |
| multivesicular body | 0.010638328 | GO:0005771 |
| plasmodesma | 0.010638328 | GO:0009506 |
| trichome branching | 0.010756266 | GO:0010091 |
| lysine biosynthetic process via diaminopimelate | 0.01150017 | GO:0009089 |
| gene expression | 0.01150017 | GO:0010467 |
| cytoplasmic microtubule organization | 0.011972199 | GO:0031122 |
| cellular macromolecule biosynthetic process | 0.011972199 | GO:0034645 |
| microtubule-severing ATPase activity | 0.012966192 | GO:0008568 |
| intracellular organelle | 0.020240139 | GO:0043229 |
| cytosol | 0.022103797 | GO:0005829 |
| Biosynthesis of amino acids | 0.028930668 | KEGG pathway |
| primary metabolic process | 0.029724662 | GO:0044238 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T002141 | AT2G34210 (0) | Transcription elongation factor Spt5 |
| CRO_T003839 | AT5G13830 (4.00E-94) | FtsJ-like methyltransferase family protein |
| CRO_T004935 | AT1G15130 (0) | Endosomal targeting BRO1-like domain-containing protein |
| CRO_T014793 | AT4G04880 (2.00E-121) | adenosine/AMP deaminase family protein |
| CRO_T019151 | AT2G27600 (4.00E-126) | SKD1|SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1; VPS4|VACUOLAR PROTEIN SORTING 4 |
| CRO_T020594 | AT3G09670 (6.00E-22) | Tudor/PWWP/MBT superfamily protein |
| CRO_T022512 | AT3G14390 (0) | Pyridoxal-dependent decarboxylase family protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000854 | gluconeogenesis I Cell cycle - Caulobacter Protein_kinases_phosphatases, PPC:4.2.1: Calcium Dependent Protein Kinase gene expression cellular nitrogen compound biosynthetic process cellular macromolecule biosynthetic process calmodulin-dependent protein kinase activity calcium-dependent protein serine/threonine kinase activity peptidyl-serine phosphorylation protein autophosphorylation abscisic acid-activated signaling pathway primary metabolic process intracellular organelle Spliceosome calmodulin binding serine-type endopeptidase activity | details |
| TreatCFM001294 | phosphatidylinositol binding regulation of barrier septum assembly hypoxanthine salvage inosine biosynthetic process adenosine catabolic process histidinol dehydrogenase activity flavin-linked sulfhydryl oxidase activity regulation of ruffle assembly Ubiquitin_Proteasome_system, E3: HECT Transcription_related, Transcription regulator: mTERF ATPase binding adenosine deaminase activity detoxification of reactive carbonyls in chloroplasts L-histidine biosynthesis traumatin and (Z)-3-hexen-1-yl acetate biosynthesis protein metabolic process chloroplast fission histidine biosynthetic process endosome organization trichome branching protein histidine kinase binding | details |
| TreatCFM001415 | cytosol inosine biosynthetic process hypoxanthine salvage adenosine catabolic process 4-aminobutanoate degradation I 4-aminobutanoate degradation IV exocyst assembly exocyst localization Autophagy - animal Butanoate metabolism nucleophagy autophagosome assembly adenosine deaminase activity 1-phosphatidylinositol 4-kinase activity L-glutamate degradation IV D-myo-inositol (1,4,5)-trisphosphate biosynthesis 3-phosphoinositide biosynthesis phosphatidylinositol phosphorylation transaminase activity exocyst protein autophosphorylation response to salt stress identical protein binding | details |
| TreatCFM002090 | L-lysine biosynthesis VI hypoxanthine salvage adenosine catabolic process inosine biosynthetic process diaminopimelate decarboxylase activity adenosine deaminase activity tubulin binding polysome prefoldin complex actin cytoskeleton actin filament depolymerization tubulin complex assembly lysine biosynthetic process via diaminopimelate microtubule-based process cytosol ribosome biogenesis Circadian rhythm - plant Regulation of actin cytoskeleton actin binding Biosynthesis of amino acids Ribosome biogenesis in eukaryotes Ubiquitin_Proteasome_system, E3 adaptor: F-box | details |
Expression profiles
 Show details about module gene expression profiling |