TreatCFM001294's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| phosphatidylinositol binding | 0.002296419 | GO:0035091 |
| regulation of barrier septum assembly | 0.012955095 | GO:0032955 |
| hypoxanthine salvage | 0.012955095 | GO:0043103 |
| inosine biosynthetic process | 0.012955095 | GO:0046103 |
| adenosine catabolic process | 0.012955095 | GO:0006154 |
| histidinol dehydrogenase activity | 0.014703682 | GO:0004399 |
| flavin-linked sulfhydryl oxidase activity | 0.014703682 | GO:0016971 |
| regulation of ruffle assembly | 0.015542899 | GO:1900027 |
| Ubiquitin_Proteasome_system, E3: HECT | 0.015919305 | ubs family |
| Transcription_related, Transcription regulator: mTERF | 0.019825246 | TF family |
| ATPase binding | 0.022041841 | GO:0051117 |
| adenosine deaminase activity | 0.022041841 | GO:0004000 |
| detoxification of reactive carbonyls in chloroplasts | 0.02503338 | plantCyc |
| L-histidine biosynthesis | 0.02503338 | plantCyc |
| traumatin and (Z)-3-hexen-1-yl acetate biosynthesis | 0.02503338 | plantCyc |
| protein metabolic process | 0.025867357 | GO:0019538 |
| chloroplast fission | 0.025867357 | GO:0010020 |
| histidine biosynthetic process | 0.025867357 | GO:0000105 |
| endosome organization | 0.025867357 | GO:0007032 |
| trichome branching | 0.025867357 | GO:0010091 |
| protein histidine kinase binding | 0.040359934 | GO:0043424 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T002099 | AT1G29800 (0) | RING/FYVE/PHD-type zinc finger family protein |
| CRO_T002448 | AT1G21150 (4.00E-31) | Mitochondrial transcription termination factor family protein |
| CRO_T009930 | - | - |
| CRO_T011595 | AT2G27600 (1.00E-69) | SKD1|SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1; VPS4|VACUOLAR PROTEIN SORTING 4 |
| CRO_T011944 | AT5G63890 (0) | ATHDH|histidinol dehydrogenase; HISN8|HISTIDINE BIOSYNTHESIS 8 |
| CRO_T014793 | AT4G04880 (2.00E-121) | adenosine/AMP deaminase family protein |
| CRO_T015185 | AT1G70750 (1.00E-12) | MyoB2|myosin binding protein 2 |
| CRO_T018637 | AT4G38640 (3.00E-70) | Plasma-membrane choline transporter family protein |
| CRO_T023435 | AT2G21260 (2.00E-49) | NAD(P)-linked oxidoreductase superfamily protein |
| CRO_T024207 | AT1G15240 (2.00E-51) | Phox-associated domain; Phox-like; Sorting nexin, C-terminal |
| CRO_T024703 | AT1G69390 (8.00E-59) | ARC12|accumulation and replication of chloroplasts 12; ATMINE1|homologue of bacterial MinE 1 |
| CRO_T026596 | AT4G12060 (2.00E-67) | Double Clp-N motif protein |
| CRO_T029061 | - | - |
| CRO_T029924 | AT1G15240 (4.00E-160) | Phox-associated domain; Phox-like; Sorting nexin, C-terminal |
| CRO_T033036 | AT3G47660 (4.00E-20) | Regulator of chromosome condensation (RCC1) family protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000042 | Biosynthesis of amino acids L-histidine biosynthesis L-phenylalanine biosynthesis II L-phenylalanine biosynthesis III (cytosolic, plants) Transcription_related, Transcription factor: LOB prephenate dehydratase activity arogenate dehydratase activity histidinol dehydrogenase activity chorismate mutase activity organic cation transport histidine biosynthetic process nitrogen utilization ammonium transmembrane transport L-phenylalanine biosynthetic process nucleoside metabolic process chloroplast stroma chloroplast outer membrane ammonium transmembrane transporter activity pollen development chloroplast organization cell wall organization or biogenesis | details |
| TreatCFM000689 | S-adenosyl-L-methionine cycle II 2'-deoxymugineic acid phytosiderophore biosynthesis baicalein degradation (hydrogen peroxide detoxification) L-methionine degradation I (to L-homocysteine) L-methionine salvage cycle I (bacteria and plants) L-methionine salvage cycle II (plants) S-adenosyl-L-methionine biosynthesis wogonin metabolism | details |
| TreatCFM000747 | L-histidine biosynthesis adenylosuccinate synthase activity histidinol dehydrogenase activity 'de novo' AMP biosynthetic process endoplasmic reticulum tubular network organization adenosine ribonucleotides de novo biosynthesis endoplasmic reticulum tubular network histidine biosynthetic process Group II intron splicing protein metabolic process | details |
| TreatCFM000849 | regulation of ruffle assembly Transcription_related, Transcription factor: RWP-RK chloroplast fission extrinsic component of plastid membrane ruffle membrane plastid part chloroplast outer membrane phosphatidylinositol binding protein self-association | details |
| TreatCFM000853 | Cell cycle - Caulobacter detoxification of reactive carbonyls in chloroplasts traumatin and (Z)-3-hexen-1-yl acetate biosynthesis Protein_kinases_phosphatases, PPC:4.2.1: Calcium Dependent Protein Kinase gluconeogenesis I nucleolar ribonuclease P complex calmodulin-dependent protein kinase activity ribonuclease P activity calcium-dependent protein serine/threonine kinase activity O-acetyltransferase activity peptidyl-serine phosphorylation protein autophosphorylation abscisic acid-activated signaling pathway gene silencing by RNA RNA phosphodiester bond hydrolysis, endonucleolytic cell wall organization or biogenesis | details |
| TreatCFM000858 | extracellular region cytokinin-O-glucosides biosynthesis L-histidine biosynthesis histidinol dehydrogenase activity growth factor activity Biosynthesis of amino acids Ubiquitin mediated proteolysis chitinase activity chitin binding histidine biosynthetic process cell proliferation chitin catabolic process ubiquitin protein ligase binding formation of glycosidic bonds, GlycosylTransferases: GTnc Transcription_related, Transcription factor: MYB Ubiquitin_Proteasome_system, E2: UBC | details |
| TreatCFM000998 | L-leucine biosynthesis DNA-3-methyladenine glycosylase activity hydro-lyase activity protein histidine kinase binding protein metabolic process base-excision repair 2-Oxocarboxylic acid metabolism Base excision repair | details |
| TreatCFM001003 | L-histidine biosynthesis L-serine transport protein metabolic process histidine biosynthetic process histidinol dehydrogenase activity L-serine transmembrane transporter activity chloroplast stroma protein processing protein histidine kinase binding protein-cysteine S-palmitoyltransferase activity phosphatidylinositol binding pollen development Biosynthesis of amino acids Endocytosis | details |
| TreatCFM001118 | pyruvate decarboxylation to acetyl CoA auxin efflux transmembrane transporter activity protein histidine kinase binding auxin efflux protein metabolic process auxin homeostasis auxin-activated signaling pathway auxin polar transport pollen development Transcription_related, Transcription factor: bHLH | details |
| TreatCFM001212 | glucokinase activity mannokinase activity glucose binding cellular glucose homeostasis glucose 6-phosphate metabolic process fructokinase activity carbohydrate phosphorylation glycolytic process Protein_kinases_phosphatases, PPC:1.15.3: Leucine Rich Repeat Kinase IV carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity Carbon metabolism carbamoyl-phosphate synthase complex urea cycle L-arginine biosynthesis I (via L-ornithine) UMP biosynthesis I 'de novo' pyrimidine nucleobase biosynthetic process L-arginine biosynthesis II (acetyl cycle) ornithine-citrulline shuttle L-glutamine degradation I arginine biosynthetic process glutamine metabolic process Pyrimidine metabolism cytosol | details |
| TreatCFM001213 | Protein_kinases_phosphatases, PPC:3.1.1: Casein Kinase I Family rRNA (cytosine-N4-)-methyltransferase activity mannokinase activity ATPase binding glucokinase activity glucose binding regulation of barrier septum assembly folic acid-containing compound metabolic process fructokinase activity cellular glucose homeostasis photosystem II repair photosystem II assembly chloroplast fission glucose 6-phosphate metabolic process rRNA base methylation Wnt signaling pathway fatty acid elongation -- saturated octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast) stearate biosynthesis II (bacteria and plants) regulation of cell shape carbohydrate phosphorylation oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor Endocytosis palmitate biosynthesis II (bacteria and plants) glycolytic process | details |
| TreatCFM001301 | Cytochrome_P450, Cytochrome P450: CYP85A Protein_kinases_phosphatases, PPC:4.5.6: LAMMER Kinase Family ribonuclease H2 complex fatty acid elongation -- saturated L-histidine biosynthesis L-leucine degradation I PRPP biosynthesis I L-valine degradation I octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast) lipid homeostasis leucine catabolic process nucleoside metabolic process nucleotide biosynthetic process histidine biosynthetic process sodium ion transport RNA catabolic process branched-chain amino acid catabolic process fatty acid beta-oxidation using acyl-CoA dehydrogenase isovaleryl-CoA dehydrogenase activity histidinol dehydrogenase activity Valine, leucine and isoleucine degradation Brassinosteroid biosynthesis RNA-DNA hybrid ribonuclease activity ribose phosphate diphosphokinase activity | details |
| TreatCFM001328 | Nucleotide excision repair 1,3-beta-D-glucan synthase activity protein histidine kinase binding DNA-3-methyladenine glycosylase activity Base excision repair (1->3)-beta-D-glucan biosynthetic process protein metabolic process base-excision repair 1,3-beta-D-glucan synthase complex | details |
| TreatCFM001415 | cytosol inosine biosynthetic process hypoxanthine salvage adenosine catabolic process 4-aminobutanoate degradation I 4-aminobutanoate degradation IV exocyst assembly exocyst localization Autophagy - animal Butanoate metabolism nucleophagy autophagosome assembly adenosine deaminase activity 1-phosphatidylinositol 4-kinase activity L-glutamate degradation IV D-myo-inositol (1,4,5)-trisphosphate biosynthesis 3-phosphoinositide biosynthesis phosphatidylinositol phosphorylation transaminase activity exocyst protein autophosphorylation response to salt stress identical protein binding | details |
| TreatCFM001483 | formation of glycosidic bonds, GlycosylTransferases: GTnc Ubiquitin_Proteasome_system, E1: ThiF beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity flavin-linked sulfhydryl oxidase activity ubiquitin activating enzyme activity detoxification of reactive carbonyls in chloroplasts traumatin and (Z)-3-hexen-1-yl acetate biosynthesis modification-dependent protein catabolic process ribosomal large subunit binding protein N-linked glycosylation protein disulfide isomerase activity integral component of Golgi membrane ribosome binding N-Glycan biosynthesis Ubiquitin mediated proteolysis cytosol extracellular space ATPase activity | details |
| TreatCFM001678 | Nucleotide excision repair Base excision repair beta-tubulin binding DNA-3-methyladenine glycosylase activity protein histidine kinase binding Group II intron splicing protein metabolic process tubulin complex assembly post-chaperonin tubulin folding pathway microtubule cytoskeleton organization base-excision repair cytochrome complex assembly GTPase activator activity positive regulation of GTPase activity | details |
| TreatCFM001709 | Protein_kinases_phosphatases, PPC:3.1.1: Casein Kinase I Family MAPK signaling pathway - yeast rRNA (cytosine-N4-)-methyltransferase activity Transcription_related, Transcription factor: bZIP ATPase binding regulation of barrier septum assembly chloroplast fission response to cold regulation of cell shape rRNA base methylation Wnt signaling pathway Endocytosis cell division defense response to bacterium peptidyl-serine phosphorylation Plant hormone signal transduction | details |
| TreatCFM001772 | mitochondrial proton-transporting ATP synthase, catalytic core daphnetin modification regulation of barrier septum assembly mRNA modification adenosine ribonucleotides de novo biosynthesis chloroplast fission chloroplast ATPase binding ATP hydrolysis coupled proton transport cell division ATP synthesis coupled proton transport nucleic acid phosphodiester bond hydrolysis endonuclease activity proton-transporting ATP synthase activity, rotational mechanism identical protein binding formation of glycosidic bonds, GlycosylTransferases: GTnc Oxidative phosphorylation | details |
| TreatCFM001811 | cytoplasm ubiquitin-protein transferase activity MAPK signaling pathway - yeast Protein_kinases_phosphatases, PPC:3.1.1: Casein Kinase I Family Ubiquitin_Proteasome_system, E3: HECT regulation of shoot system development regulation of signal transduction seed maturation regulation of seed germination Wnt signaling pathway regulation of cell shape Transcription_related, Transcription factor: Trihelix Endocytosis transcription regulatory region DNA binding Ubiquitin mediated proteolysis Transcription_related, Transcription factor: C3H zinc ion binding protein ubiquitination involved in ubiquitin-dependent protein catabolic process peptidyl-serine phosphorylation nucleus nucleolus embryo development ending in seed dormancy | details |
| TreatCFM001855 | Cell cycle - Caulobacter detoxification of reactive carbonyls in chloroplasts traumatin and (Z)-3-hexen-1-yl acetate biosynthesis cytosol nuclear envelope chaperone-mediated protein folding cell wall organization or biogenesis protein import into nucleus protein peptidyl-prolyl isomerization protein transporter activity peptidyl-prolyl cis-trans isomerase activity FK506 binding O-acetyltransferase activity serine-type endopeptidase activity | details |
| TreatCFM002035 | Endocytosis L-lysine biosynthesis VI diaminopimelate decarboxylase activity rRNA (uridine-2'-O-)-methyltransferase activity adenosine deaminase activity inosine biosynthetic process adenosine catabolic process hypoxanthine salvage endosome organization cellular nitrogen compound biosynthetic process enzyme-directed rRNA 2'-O-methylation multivesicular body plasmodesma trichome branching lysine biosynthetic process via diaminopimelate gene expression cytoplasmic microtubule organization cellular macromolecule biosynthetic process microtubule-severing ATPase activity intracellular organelle cytosol Biosynthesis of amino acids primary metabolic process | details |
| TreatCFM002090 | L-lysine biosynthesis VI hypoxanthine salvage adenosine catabolic process inosine biosynthetic process diaminopimelate decarboxylase activity adenosine deaminase activity tubulin binding polysome prefoldin complex actin cytoskeleton actin filament depolymerization tubulin complex assembly lysine biosynthetic process via diaminopimelate microtubule-based process cytosol ribosome biogenesis Circadian rhythm - plant Regulation of actin cytoskeleton actin binding Biosynthesis of amino acids Ribosome biogenesis in eukaryotes Ubiquitin_Proteasome_system, E3 adaptor: F-box | details |
Expression profiles
 Show details about module gene expression profiling |