TreatCFM000854's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| gluconeogenesis I | 0.008834517 | plantCyc |
| Cell cycle - Caulobacter | 0.012215977 | KEGG pathway |
| Protein_kinases_phosphatases, PPC:4.2.1: Calcium Dependent Protein Kinase | 0.015395926 | kinase family |
| gene expression | 0.024215271 | GO:0010467 |
| cellular nitrogen compound biosynthetic process | 0.024215271 | GO:0044271 |
| cellular macromolecule biosynthetic process | 0.024215271 | GO:0034645 |
| calmodulin-dependent protein kinase activity | 0.030302961 | GO:0004683 |
| calcium-dependent protein serine/threonine kinase activity | 0.030302961 | GO:0009931 |
| peptidyl-serine phosphorylation | 0.039175002 | GO:0018105 |
| protein autophosphorylation | 0.039175002 | GO:0046777 |
| abscisic acid-activated signaling pathway | 0.039175002 | GO:0009738 |
| primary metabolic process | 0.039175002 | GO:0044238 |
| intracellular organelle | 0.040433811 | GO:0043229 |
| Spliceosome | 0.04413962 | KEGG pathway |
| calmodulin binding | 0.045662773 | GO:0005516 |
| serine-type endopeptidase activity | 0.048248928 | GO:0004252 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T002141 | AT2G34210 (0) | Transcription elongation factor Spt5 |
| CRO_T002504 | AT1G02560 (8.00E-19) | CLPP5|nuclear encoded CLP protease 5; NCLPP1|NUCLEAR-ENCODED CLPP 1; NCLPP5|NUCLEAR CLPP 5 |
| CRO_T014514 | AT1G09900 (4.00E-32) | Pentatricopeptide repeat (PPR-like) superfamily protein |
| CRO_T017813 | AT3G07170 (6.00E-42) | Sterile alpha motif (SAM) domain-containing protein |
| CRO_T024445 | AT3G19670 (4.00E-146) | ATPRP40B|pre-mRNA-processing protein 40B |
| CRO_T031518 | AT1G12680 (7.00E-51) | PEPKR2|phosphoenolpyruvate carboxylase-related kinase 2 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000853 | Cell cycle - Caulobacter detoxification of reactive carbonyls in chloroplasts traumatin and (Z)-3-hexen-1-yl acetate biosynthesis Protein_kinases_phosphatases, PPC:4.2.1: Calcium Dependent Protein Kinase gluconeogenesis I nucleolar ribonuclease P complex calmodulin-dependent protein kinase activity ribonuclease P activity calcium-dependent protein serine/threonine kinase activity O-acetyltransferase activity peptidyl-serine phosphorylation protein autophosphorylation abscisic acid-activated signaling pathway gene silencing by RNA RNA phosphodiester bond hydrolysis, endonucleolytic cell wall organization or biogenesis | details |
| TreatCFM001239 | starch biosynthesis glucose-1-phosphate adenylyltransferase activity positive regulation of proteasomal ubiquitin-dependent protein catabolic process starch biosynthetic process glycogen biosynthetic process Hedgehog signaling pathway protein ubiquitination involved in ubiquitin-dependent protein catabolic process protein polyubiquitination biosynthetic process ubiquitin ligase complex ubiquitin conjugating enzyme binding Cell cycle - Caulobacter Ubiquitin_Proteasome_system, E3 adaptor: BTB | details |
| TreatCFM001412 | formation of glycosidic bonds, GlycosylTransferases: GTnc Cell cycle - Caulobacter Transcription_related, Transcription factor: bZIP chaperone-mediated protein folding protein peptidyl-prolyl isomerization FK506 binding peptidyl-prolyl cis-trans isomerase activity serine-type endopeptidase activity | details |
| TreatCFM001452 | UDP-N-acetyl-D-glucosamine biosynthesis II mRNA guanylyltransferase activity glutamine-fructose-6-phosphate transaminase (isomerizing) activity polynucleotide 5'-phosphatase activity serine-type endopeptidase activity serine-type exopeptidase activity 7-methylguanosine mRNA capping UDP-N-acetylglucosamine metabolic process carbohydrate derivative biosynthetic process polynucleotide 5' dephosphorylation proteolysis DNA ligation voltage-gated chloride channel activity protein tyrosine/serine/threonine phosphatase activity DNA ligase (ATP) activity Renin-angiotensin system chloride transport fructose 6-phosphate metabolic process cellular macromolecule biosynthetic process regulation of anion transmembrane transport Cell cycle - Caulobacter peptidyl-tyrosine dephosphorylation protein tyrosine phosphatase activity DNA recombination unidimensional cell growth DNA metabolic process ion transmembrane transport nucleotidyltransferase activity Amino sugar and nucleotide sugar metabolism mRNA surveillance pathway DNA repair | details |
| TreatCFM001638 | Protein_kinases_phosphatases, PPC:2.2.1: Unknown Function Kinase Cell cycle - Caulobacter Protein_kinases_phosphatases, PPC:4.5.2: CDC2 Like Kinase Family protein kinase activity | details |
| TreatCFM001855 | Cell cycle - Caulobacter detoxification of reactive carbonyls in chloroplasts traumatin and (Z)-3-hexen-1-yl acetate biosynthesis cytosol nuclear envelope chaperone-mediated protein folding cell wall organization or biogenesis protein import into nucleus protein peptidyl-prolyl isomerization protein transporter activity peptidyl-prolyl cis-trans isomerase activity FK506 binding O-acetyltransferase activity serine-type endopeptidase activity | details |
| TreatCFM001945 | Ubiquitin_Proteasome_system, E3: HECT DNA endoreduplication trichome branching Cell cycle - Caulobacter Ubiquitin mediated proteolysis protein ubiquitination involved in ubiquitin-dependent protein catabolic process plasma membrane | details |
| TreatCFM002035 | Endocytosis L-lysine biosynthesis VI diaminopimelate decarboxylase activity rRNA (uridine-2'-O-)-methyltransferase activity adenosine deaminase activity inosine biosynthetic process adenosine catabolic process hypoxanthine salvage endosome organization cellular nitrogen compound biosynthetic process enzyme-directed rRNA 2'-O-methylation multivesicular body plasmodesma trichome branching lysine biosynthetic process via diaminopimelate gene expression cytoplasmic microtubule organization cellular macromolecule biosynthetic process microtubule-severing ATPase activity intracellular organelle cytosol Biosynthesis of amino acids primary metabolic process | details |
| TreatCFM002071 | phosphatidylinositol-mediated signaling proteolysis protein initiator methionine removal metalloaminopeptidase activity 1-phosphatidylinositol 4-kinase activity phosphatidylinositol dephosphorylation hydrolysis of carbohydrate esters, Carbohydrate Esterases: CE8 cytosolic ribosome Cell cycle - Caulobacter Inositol phosphate metabolism phosphatidylinositol phosphorylation 3-phosphoinositide biosynthesis D-myo-inositol (1,4,5)-trisphosphate biosynthesis D-myo-inositol (1,4,5)-trisphosphate degradation homogalacturonan degradation protein peptidyl-prolyl isomerization peptidyl-prolyl cis-trans isomerase activity protein folding | details |
| TreatCFM002127 | DNA ligation polynucleotide 5' dephosphorylation 7-methylguanosine mRNA capping mRNA guanylyltransferase activity polynucleotide 5'-phosphatase activity Cell cycle - Caulobacter DNA ligase (ATP) activity protein tyrosine/serine/threonine phosphatase activity cellular macromolecule biosynthetic process mRNA surveillance pathway peptidyl-tyrosine dephosphorylation DNA recombination protein tyrosine phosphatase activity DNA metabolic process nucleotidyltransferase activity proteasome-mediated ubiquitin-dependent protein catabolic process DNA repair | details |
Expression profiles
 Show details about module gene expression profiling |