TreatCFM002040's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| mRNA modification | 0.001950499 | GO:0016556 |
| copper ion export | 0.002437583 | GO:0060003 |
| Protein_kinases_phosphatases, PPC:2.1.4: GmPK6/AtMRK1 Family | 0.003895237 | kinase family |
| MAPK signaling pathway - plant | 0.01934999 | KEGG pathway |
| nucleic acid phosphodiester bond hydrolysis | 0.019421584 | GO:0090305 |
| copper-exporting ATPase activity | 0.023359069 | GO:0004008 |
| ribosomal large subunit binding | 0.023359069 | GO:0043023 |
| endonuclease activity | 0.032404819 | GO:0004519 |
| ribosome binding | 0.032404819 | GO:0043022 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T001963 | AT3G46920 (1.00E-78) | Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain |
| CRO_T002549 | AT1G56050 (3.00E-176) | GTP-binding protein-related |
| CRO_T002686 | AT4G33520 (4.00E-61) | AtHMAC6|heavy metal ATPase 6; PAA1|P-type ATP-ase 1 |
| CRO_T004127 | AT1G06240 (8.00E-132) | Protein of unknown function DUF455 |
| CRO_T006873 | - | - |
| CRO_T016843 | AT4G37380 (3.00E-123) | Tetratricopeptide repeat (TPR)-like superfamily protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000337 | details | |
| TreatCFM001483 | formation of glycosidic bonds, GlycosylTransferases: GTnc Ubiquitin_Proteasome_system, E1: ThiF beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity flavin-linked sulfhydryl oxidase activity ubiquitin activating enzyme activity detoxification of reactive carbonyls in chloroplasts traumatin and (Z)-3-hexen-1-yl acetate biosynthesis modification-dependent protein catabolic process ribosomal large subunit binding protein N-linked glycosylation protein disulfide isomerase activity integral component of Golgi membrane ribosome binding N-Glycan biosynthesis Ubiquitin mediated proteolysis cytosol extracellular space ATPase activity | details |
| TreatCFM001699 | histone lysine methylation histone-lysine N-methyltransferase activity Transcription_related, Transcription regulator: SET formation of glycosidic bonds, GlycosylTransferases: GTnc | details |
| TreatCFM001772 | mitochondrial proton-transporting ATP synthase, catalytic core daphnetin modification regulation of barrier septum assembly mRNA modification adenosine ribonucleotides de novo biosynthesis chloroplast fission chloroplast ATPase binding ATP hydrolysis coupled proton transport cell division ATP synthesis coupled proton transport nucleic acid phosphodiester bond hydrolysis endonuclease activity proton-transporting ATP synthase activity, rotational mechanism identical protein binding formation of glycosidic bonds, GlycosylTransferases: GTnc Oxidative phosphorylation | details |
| TreatCFM002052 | phosphogluconate dehydrogenase (decarboxylating) activity organic cyclic compound binding S-adenosylmethionine-dependent methyltransferase activity helicase activity NAD binding heterocyclic compound binding | details |
Expression profiles
 Show details about module gene expression profiling |