TreatCFM001483's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| formation of glycosidic bonds, GlycosylTransferases: GTnc | 0.002127502 | cazy family |
| Ubiquitin_Proteasome_system, E1: ThiF | 0.004781931 | ubs family |
| beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity | 0.007852529 | GO:0003830 |
| flavin-linked sulfhydryl oxidase activity | 0.007852529 | GO:0016971 |
| ubiquitin activating enzyme activity | 0.007852529 | GO:0004839 |
| detoxification of reactive carbonyls in chloroplasts | 0.008227641 | plantCyc |
| traumatin and (Z)-3-hexen-1-yl acetate biosynthesis | 0.008227641 | plantCyc |
| modification-dependent protein catabolic process | 0.010424761 | GO:0019941 |
| ribosomal large subunit binding | 0.013246247 | GO:0043023 |
| protein N-linked glycosylation | 0.015627901 | GO:0006487 |
| protein disulfide isomerase activity | 0.018829365 | GO:0003756 |
| integral component of Golgi membrane | 0.023447049 | GO:0030173 |
| ribosome binding | 0.024501105 | GO:0043022 |
| N-Glycan biosynthesis | 0.024570135 | KEGG pathway |
| Ubiquitin mediated proteolysis | 0.024570135 | KEGG pathway |
| cytosol | 0.027741911 | GO:0005829 |
| extracellular space | 0.027741911 | GO:0005615 |
| ATPase activity | 0.049437898 | GO:0016887 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T002549 | AT1G56050 (3.00E-176) | GTP-binding protein-related |
| CRO_T018185 | AT2G13290 (2.00E-140) | beta-1,4-N-acetylglucosaminyltransferase family protein |
| CRO_T019722 | AT2G30110 (0) | ATUBA1|ubiquitin-activating enzyme 1; MOS5|MODIFIER OF SNC1 5 |
| CRO_T023435 | AT2G21260 (2.00E-49) | NAD(P)-linked oxidoreductase superfamily protein |
| CRO_T029061 | - | - |
| CRO_T029103 | AT5G65290 (6.00E-79) | LMBR1-like membrane protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000853 | Cell cycle - Caulobacter detoxification of reactive carbonyls in chloroplasts traumatin and (Z)-3-hexen-1-yl acetate biosynthesis Protein_kinases_phosphatases, PPC:4.2.1: Calcium Dependent Protein Kinase gluconeogenesis I nucleolar ribonuclease P complex calmodulin-dependent protein kinase activity ribonuclease P activity calcium-dependent protein serine/threonine kinase activity O-acetyltransferase activity peptidyl-serine phosphorylation protein autophosphorylation abscisic acid-activated signaling pathway gene silencing by RNA RNA phosphodiester bond hydrolysis, endonucleolytic cell wall organization or biogenesis | details |
| TreatCFM001294 | phosphatidylinositol binding regulation of barrier septum assembly hypoxanthine salvage inosine biosynthetic process adenosine catabolic process histidinol dehydrogenase activity flavin-linked sulfhydryl oxidase activity regulation of ruffle assembly Ubiquitin_Proteasome_system, E3: HECT Transcription_related, Transcription regulator: mTERF ATPase binding adenosine deaminase activity detoxification of reactive carbonyls in chloroplasts L-histidine biosynthesis traumatin and (Z)-3-hexen-1-yl acetate biosynthesis protein metabolic process chloroplast fission histidine biosynthetic process endosome organization trichome branching protein histidine kinase binding | details |
| TreatCFM001855 | Cell cycle - Caulobacter detoxification of reactive carbonyls in chloroplasts traumatin and (Z)-3-hexen-1-yl acetate biosynthesis cytosol nuclear envelope chaperone-mediated protein folding cell wall organization or biogenesis protein import into nucleus protein peptidyl-prolyl isomerization protein transporter activity peptidyl-prolyl cis-trans isomerase activity FK506 binding O-acetyltransferase activity serine-type endopeptidase activity | details |
| TreatCFM002040 | mRNA modification copper ion export Protein_kinases_phosphatases, PPC:2.1.4: GmPK6/AtMRK1 Family MAPK signaling pathway - plant nucleic acid phosphodiester bond hydrolysis copper-exporting ATPase activity ribosomal large subunit binding endonuclease activity ribosome binding | details |
| TreatCFM002127 | DNA ligation polynucleotide 5' dephosphorylation 7-methylguanosine mRNA capping mRNA guanylyltransferase activity polynucleotide 5'-phosphatase activity Cell cycle - Caulobacter DNA ligase (ATP) activity protein tyrosine/serine/threonine phosphatase activity cellular macromolecule biosynthetic process mRNA surveillance pathway peptidyl-tyrosine dephosphorylation DNA recombination protein tyrosine phosphatase activity DNA metabolic process nucleotidyltransferase activity proteasome-mediated ubiquitin-dependent protein catabolic process DNA repair | details |
Expression profiles
 Show details about module gene expression profiling |