TreatCFM001725's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Influenza A | 0.000354636 | KEGG pathway |
| tRNA wobble position uridine thiolation | 0.002925532 | GO:0002143 |
| sulfurtransferase activity | 0.002955301 | GO:0016783 |
| L-alanine biosynthesis III | 0.003722304 | plantCyc |
| transcription corepressor activity | 0.004431642 | GO:0003714 |
| molybdenum cofactor biosynthesis | 0.004781931 | plantCyc |
| small GTPase mediated signal transduction | 0.032514336 | GO:0007264 |
| methyltransferase activity | 0.047443232 | GO:0008168 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T001741 | - | - |
| CRO_T002522 | AT1G43890 (2.00E-97) | ATRAB-C1|ARABIDOPSIS RAB GTPASE HOMOLOG C1; ATRAB18|ARABIDOPSIS RAB GTPASE HOMOLOG B18; RAB18|RAB GTPASE HOMOLOG B18; RAB18-1|RAB GTPASE HOMOLOG 18-1; RABC1|RAB GTPASE HOMOLOG C1 |
| CRO_T014690 | AT3G03570 (0) | Protein of unknown function (DUF3550/UPF0682) |
| CRO_T022914 | AT1G51310 (3.00E-178) | transferases; tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferases |
| CRO_T028984 | AT2G15590 (4.00E-09) | Protein of unknown function (DUF1685) |
| CRO_T030944 | AT4G01990 (2.00E-69) | Tetratricopeptide repeat (TPR)-like superfamily protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000735 | Antigen processing and presentation Transcription_related, Transcription factor: NF-YB asparagine biosynthetic process glutamine metabolic process asparagine synthase (glutamine-hydrolyzing) activity | details |
| TreatCFM001231 | Influenza A Transcription_related, Transcription factor: RWP-RK tRNA wobble position uridine thiolation sulfurtransferase activity L-alanine biosynthesis III transcription corepressor activity molybdenum cofactor biosynthesis zinc II ion transmembrane transport zinc ion transmembrane transporter activity methyltransferase activity | details |
| TreatCFM001707 | DNA replication origin binding transcription corepressor activity Cell cycle Golgi organization DNA replication initiation intra-Golgi vesicle-mediated transport nuclear origin of replication recognition complex Golgi transport complex protein transport protein transporter activity | details |
| TreatCFM001986 | L-alanine biosynthesis III molybdenum cofactor biosynthesis tRNA wobble position uridine thiolation chromosome condensation protein targeting to chloroplast Cell cycle - yeast Fanconi anemia pathway sulfurtransferase activity hydrolase activity, acting on acid anhydrides condensed chromosome mitotic nuclear division zinc II ion transmembrane transport | details |
| TreatCFM002010 | Transcription_related, Transcription factor: ERF | details |
| TreatCFM002049 | UDP-α-D-glucuronate biosynthesis (from myo-inositol) formation of glycosidic bonds, GlycosylTransferases: GTnc Transcription_related, Transcription factor: MYB-related phosphotransferase activity, alcohol group as acceptor Pentose and glucuronate interconversions small GTPase mediated signal transduction | details |
| TreatCFM002080 | chromosome condensation condensed chromosome mitotic nuclear division Cell cycle - yeast Fanconi anemia pathway Transcription_related, Transcription factor: HB cytoplasmic part | details |
| TreatCFM002166 | mRNA pseudouridine synthesis tRNA wobble position uridine thiolation positive regulation of transcription from RNA polymerase I promoter t-UTP complex formation of glycosidic bonds, GlycosylTransferases: GTnc 90S preribosome sulfurtransferase activity L-alanine biosynthesis III molybdenum cofactor biosynthesis starch biosynthesis starch binding glycogen (starch) synthase activity pseudouridine synthase activity snoRNA binding Transcription_related, Transcription factor: C3H Ribosome biogenesis in eukaryotes tRNA modification maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) small-subunit processome | details |
| TreatCFM002170 | Proteasome L-alanine biosynthesis III molybdenum cofactor biosynthesis sulfurtransferase activity cytosolic proteasome complex nuclear proteasome complex proteasome core complex ribonucleoside-diphosphate reductase complex tRNA wobble position uridine thiolation positive regulation of RNA polymerase II transcriptional preinitiation complex assembly deoxyribonucleoside diphosphate metabolic process deoxyribonucleotide biosynthetic process regulation of cell cycle positive regulation of proteasomal protein catabolic process proteasome regulatory particle, base subcomplex ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor proteasome-activating ATPase activity TBP-class protein binding threonine-type endopeptidase activity ER-associated ubiquitin-dependent protein catabolic process Ubiquitin_Proteasome_system, E3 adaptor: DWD multicellular organism development peptidase activity proteolysis involved in cellular protein catabolic process Purine metabolism RNA transport | details |
Expression profiles
 Show details about module gene expression profiling |