TreatCFM002079's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| transcription factor TFIIE complex | 0.002925532 | GO:0005673 |
| Basal transcription factors | 0.007249122 | KEGG pathway |
| transcription initiation from RNA polymerase II promoter | 0.014767773 | GO:0006367 |
| vesicle-mediated transport | 0.035280683 | GO:0016192 |
| translational initiation | 0.035280683 | GO:0006413 |
| translation initiation factor activity | 0.041260108 | GO:0003743 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T001815 | - | - |
| CRO_T005091 | AT4G27540 (4.00E-64) | PRA1.H|prenylated RAB acceptor 1.H |
| CRO_T008364 | AT5G66290 (2.00E-62) | unknown protein |
| CRO_T009369 | - | - |
| CRO_T009856 | AT4G20330 (6.00E-98) | Transcription initiation factor TFIIE, beta subunit |
| CRO_T016657 | AT3G54680 (9.00E-10) | proteophosphoglycan-related |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000017 | Oxidative phosphorylation mitochondrion NADH dehydrogenase (ubiquinone) activity mitochondrial inner membrane heme transporter activity heme transport cytochrome-c oxidase activity respiratory chain cytochrome complex assembly hydrogen ion transmembrane transport ATP synthesis coupled electron transport heme binding aerobic respiration hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances aerobic electron transport chain electron transport chain generation of precursor metabolites and energy ATP synthesis coupled proton transport mitochondrial electron transport, NADH to ubiquinone hydrogen ion transmembrane transporter activity quinone binding photosynthetic electron transport in photosystem II succinate dehydrogenase activity electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity succinate dehydrogenase complex | details |
| TreatCFM000168 | RNA transport | details |
| TreatCFM000193 | chromoplast stroma chloroplast stroma oxidoreductase activity, acting on NAD(P)H ATP binding Oxidative phosphorylation | details |
| TreatCFM000255 | HTLV-I infection Transcription_related, Transcription factor: NF-YC Ubiquitin_Proteasome_system, E3 adaptor: BTB | details |
| TreatCFM000296 | details | |
| TreatCFM000419 | vacuolar proton-transporting V-type ATPase complex assembly Transcription_related, Transcription factor: NF-YC endoplasmic reticulum-Golgi intermediate compartment membrane protein heterodimerization activity COPII vesicle coat | details |
| TreatCFM000428 | PcG protein complex copper uptake transmembrane transporter activity regulation of gene expression by genetic imprinting cellular metal ion homeostasis negative regulation of molecular function, epigenetic Lysine degradation single-stranded RNA binding protein import into chloroplast stroma DNA mediated transformation histone methylation copper ion transmembrane transport chloroplast inner membrane leaf morphogenesis vegetative to reproductive phase transition of meristem | details |
| TreatCFM000446 | details | |
| TreatCFM000513 | details | |
| TreatCFM000557 | Transcription_related, Transcription factor: NF-YC ribosomal protein import into nucleus protein import into nucleus, docking protein import into nucleus, translocation NLS-bearing protein import into nucleus nuclear periphery COPII vesicle coat nuclear membrane ER to Golgi vesicle-mediated transport | details |
| TreatCFM000636 | mitotic spindle assembly checkpoint Cell cycle Transcription_related, Transcription factor: bZIP | details |
| TreatCFM000656 | Cell cycle - Caulobacter serine-type endopeptidase activity proteolysis chloroplast stroma cellular metabolic process lipid metabolic process | details |
| TreatCFM000679 | Transcription_related, Transcription factor: NF-YC DNA metabolic process protein heterodimerization activity | details |
| TreatCFM000705 | hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc lysozyme activity chitinase activity chitin binding chitin catabolic process Amino sugar and nucleotide sugar metabolism extracellular region | details |
| TreatCFM000766 | mitochondrion translation structural constituent of ribosome large ribosomal subunit chloroplast | details |
| TreatCFM000819 | Toll and Imd signaling pathway postreplication repair protein K63-linked ubiquitination Ubiquitin_Proteasome_system, E2: UBC vindoline and vinblastine biosynthesis spliceosomal complex mRNA splicing, via spliceosome Spliceosome | details |
| TreatCFM000827 | details | |
| TreatCFM000914 | Transcription_related, Transcription factor: CPP mismatch repair complex Mismatch repair Transcription_related, Transcription regulator: SNF2 Mitophagy - animal mismatched DNA binding serine-type peptidase activity very long chain fatty acid biosynthesis I very long chain fatty acid biosynthesis II Fatty acid metabolism Homologous recombination | details |
| TreatCFM000947 | regulation of transcription from RNA polymerase II promoter RNA polymerase II regulatory region sequence-specific DNA binding | details |
| TreatCFM000972 | Purine metabolism transport | details |
| TreatCFM001107 | organic substance metabolic process nitrogen compound metabolic process cellular metabolic process primary metabolic process binding | details |
| TreatCFM001243 | Transcription_related, Transcription factor: NF-YC beta-galactosidase complex Galactose metabolism beta-galactosidase activity carbohydrate binding protein heterodimerization activity carbohydrate metabolic process | details |
| TreatCFM001252 | nuclear export signal receptor activity protein export from nucleus Ran GTPase binding COPII vesicle coat SCF ubiquitin ligase complex nuclear pore ER to Golgi vesicle-mediated transport Ubiquitin_Proteasome_system, E3 adaptor: F-box intracellular protein transport | details |
| TreatCFM001279 | UMP biosynthesis I dihydroorotate dehydrogenase activity hydroxymethyl-, formyl- and related transferase activity formyltetrahydrofolate deformylase activity Glyoxylate and dicarboxylate metabolism protein refolding regulation of leaf development pyrimidine ribonucleotide biosynthetic process 'de novo' IMP biosynthetic process 'de novo' pyrimidine nucleobase biosynthetic process Transcription_related, Transcription factor: TCP Pyrimidine metabolism mitochondrion amino acid binding RNA degradation | details |
| TreatCFM001527 | RNA transport nuclear membrane COPII vesicle coat nuclear periphery anion transmembrane transport NLS-bearing protein import into nucleus ribosomal protein import into nucleus protein import into nucleus, docking protein import into nucleus, translocation Ran GTPase binding inorganic phosphate transmembrane transporter activity nuclear localization sequence binding ER to Golgi vesicle-mediated transport nucleotidyltransferase activity translational initiation protein transporter activity | details |
| TreatCFM001576 | details | |
| TreatCFM001602 | isoleucyl-tRNA aminoacylation isoleucine-tRNA ligase activity aminoacyl-tRNA editing activity regulation of translational fidelity Aminoacyl-tRNA biosynthesis transcription factor TFIIE complex protein transmembrane transport protein localization to organelle transcription initiation from RNA polymerase II promoter protein channel activity cytosol Basal transcription factors translational initiation Ribosome biogenesis in eukaryotes Ubiquitin_Proteasome_system, E3 adaptor: DWD | details |
| TreatCFM001649 | Ribosome | details |
| TreatCFM001652 | Transcription_related, Transcription factor: NF-YC protein import into nucleus, docking ribosomal protein import into nucleus protein import into nucleus, translocation NLS-bearing protein import into nucleus nuclear periphery nuclear membrane nuclear localization sequence binding Ran GTPase binding protein transporter activity protein heterodimerization activity RNA transport | details |
| TreatCFM001861 | post-embryonic root development ether hydrolase activity Adherens junction xyloglucan biosynthesis PPAR signaling pathway MAPK signaling pathway - yeast protein domain specific binding formation of glycosidic bonds, GlycosylTransferases: GTnc Ubiquitin_Proteasome_system, E2: UBC | details |
| TreatCFM001902 | beta-galactosidase complex Galactose metabolism pollen tube development polar nucleus fusion beta-galactosidase activity carbohydrate binding transferase activity, transferring glycosyl groups | details |
| TreatCFM001940 | mitochondrial small ribosomal subunit Transcription_related, Transcription factor: TCP regulation of leaf development solute:proton antiporter activity endonuclease activity nucleic acid phosphodiester bond hydrolysis hydrogen ion transmembrane transport | details |
| TreatCFM001941 | transcription factor TFIIE complex Basal transcription factors transcription initiation from RNA polymerase II promoter translational initiation | details |
| TreatCFM001999 | Transcription_related, Transcription factor: NF-YC COPII vesicle coat ER to Golgi vesicle-mediated transport intracellular protein transport protein heterodimerization activity Protein processing in endoplasmic reticulum | details |
Expression profiles
 Show details about module gene expression profiling |