TreatCFM001279's detailed annotation
|
Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| UMP biosynthesis I | 0.001417916 | plantCyc |
| dihydroorotate dehydrogenase activity | 0.002024232 | GO:0004152 |
| hydroxymethyl-, formyl- and related transferase activity | 0.002024232 | GO:0016742 |
| formyltetrahydrofolate deformylase activity | 0.002024232 | GO:0008864 |
| Glyoxylate and dicarboxylate metabolism | 0.002925532 | KEGG pathway |
| protein refolding | 0.004450678 | GO:0042026 |
| regulation of leaf development | 0.004450678 | GO:2000024 |
| pyrimidine ribonucleotide biosynthetic process | 0.004450678 | GO:0009220 |
| 'de novo' IMP biosynthetic process | 0.004450678 | GO:0006189 |
| 'de novo' pyrimidine nucleobase biosynthetic process | 0.004450678 | GO:0006207 |
| Transcription_related, Transcription factor: TCP | 0.004955377 | TF family |
| Pyrimidine metabolism | 0.017025301 | KEGG pathway |
| mitochondrion | 0.018248754 | GO:0005739 |
| amino acid binding | 0.020187054 | GO:0016597 |
| RNA degradation | 0.023928528 | KEGG pathway |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T001257 | AT4G17360 (9.00E-136) | Formyl transferase |
| CRO_T006559 | AT1G35560 (8.00E-24) | TCP23|TCP domain protein 23 |
| CRO_T008364 | AT5G66290 (2.00E-62) | unknown protein |
| CRO_T015761 | AT1G51580 (1.00E-18) | RNA-binding KH domain-containing protein |
| CRO_T017557 | AT5G23300 (2.00E-107) | PYRD|pyrimidine d |
| CRO_T029417 | AT2G33210 (0) | HSP60-2|heat shock protein 60-2 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000311 | formyltetrahydrofolate deformylase activity purine nucleotide binding cyanoalanine nitrilase activity phosphoenolpyruvate carboxykinase activity hydroxymethyl-, formyl- and related transferase activity 3-cyanoalanine hydratase activity cyanide detoxification I L-asparagine degradation I Glyoxylate and dicarboxylate metabolism cyanide catabolic process embryonic pattern specification detoxification of nitrogen compound superpathway of aspartate and asparagine biosynthesis myosin heavy chain kinase activity Pwp2p-containing subcomplex of 90S preribosome gluconeogenesis 'de novo' IMP biosynthetic process Cyanoamino acid metabolism snoRNA binding maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) amino acid binding mRNA surveillance pathway Ribosome biogenesis in eukaryotes cell division Ubiquitin_Proteasome_system, E3 adaptor: DWD | details |
| TreatCFM001304 | Cytochrome_P450, Cytochrome P450: CYP94D dihydroneopterin aldolase activity hydroxymethyl-, formyl- and related transferase activity cyanoalanine nitrilase activity formyltetrahydrofolate deformylase activity 3-cyanoalanine hydratase activity folic acid biosynthetic process cyanide catabolic process detoxification of nitrogen compound Glyoxylate and dicarboxylate metabolism tetrahydrofolate biosynthetic process 6-hydroxymethyl-dihydropterin diphosphate biosynthesis I cyanide detoxification I L-asparagine degradation I Cyanoamino acid metabolism Folate biosynthesis 'de novo' IMP biosynthetic process aromatase activity superpathway of aspartate and asparagine biosynthesis tetrahydrofolate biosynthesis II snoRNA binding rRNA processing amino acid binding | details |
| TreatCFM001470 | putrescine biosynthesis II putrescine biosynthetic process hydroxymethyl-, formyl- and related transferase activity agmatine deiminase activity protein-arginine deiminase activity formyltetrahydrofolate deformylase activity Glyoxylate and dicarboxylate metabolism 'de novo' IMP biosynthetic process structural constituent of ribosome Cul3-RING ubiquitin ligase complex mitochondrial small ribosomal subunit Arginine and proline metabolism large ribosomal subunit amino acid binding | details |
| TreatCFM001621 | cytoplasmic ribonucleoprotein granule AMPK signaling pathway vesicle docking involved in exocytosis protein secretion chromosome segregation regulation of gene expression small-subunit processome rRNA processing RNA secondary structure unwinding translational initiation Ubiquitin_Proteasome_system, E3 adaptor: DWD small GTPase mediated signal transduction protein dephosphorylation | details |
| TreatCFM001622 | cytoplasmic ribonucleoprotein granule hydroxymethyl-, formyl- and related transferase activity all-trans-nonaprenyl-diphosphate synthase (geranyl-diphosphate specific) activity trans-octaprenyltranstransferase activity formyltetrahydrofolate deformylase activity dihydroneopterin aldolase activity Glyoxylate and dicarboxylate metabolism heptaprenyl diphosphate biosynthesis hexaprenyl diphosphate biosynthesis nonaprenyl diphosphate biosynthesis I nonaprenyl diphosphate biosynthesis II octaprenyl diphosphate biosynthesis superpathway of plastoquinol biosynthesis heptaprenyl diphosphate synthase activity 6-hydroxymethyl-dihydropterin diphosphate biosynthesis I Folate biosynthesis polyisoprenoid biosynthesis geranylgeranyl diphosphate biosynthesis superpathway of geranylgeranyl diphosphate biosynthesis II (via MEP) superpathway of geranylgeranyldiphosphate biosynthesis I (via mevalonate) folic acid biosynthetic process tetrahydrofolate biosynthesis II chromosome segregation tetrahydrofolate biosynthetic process 'de novo' IMP biosynthetic process small-subunit processome snoRNA binding regulation of gene expression isoprenoid biosynthetic process Terpenoid backbone biosynthesis rRNA processing RNA secondary structure unwinding translational initiation amino acid binding Ubiquitin_Proteasome_system, E3 adaptor: DWD Photosynthesis ATP-dependent RNA helicase activity | details |
| TreatCFM001940 | mitochondrial small ribosomal subunit Transcription_related, Transcription factor: TCP regulation of leaf development solute:proton antiporter activity endonuclease activity nucleic acid phosphodiester bond hydrolysis hydrogen ion transmembrane transport | details |
| TreatCFM002079 | transcription factor TFIIE complex Basal transcription factors transcription initiation from RNA polymerase II promoter vesicle-mediated transport translational initiation translation initiation factor activity | details |
Expression profiles
 Show details about module gene expression profiling |