TreatCFM001941's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| transcription factor TFIIE complex | 0.001595745 | GO:0005673 |
| Basal transcription factors | 0.007249122 | KEGG pathway |
| transcription initiation from RNA polymerase II promoter | 0.00974673 | GO:0006367 |
| translational initiation | 0.024778988 | GO:0006413 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T007440 | AT1G02860 (7.00E-04) | BAH1|BENZOIC ACID HYPERSENSITIVE 1; NLA|nitrogen limitation adaptation |
| CRO_T008146 | AT1G47740 (4.00E-101) | PPPDE putative thiol peptidase family protein |
| CRO_T009856 | AT4G20330 (6.00E-98) | Transcription initiation factor TFIIE, beta subunit |
| CRO_T019229 | AT1G54320 (1.00E-113) | LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein |
| CRO_T029577 | - | - |
| CRO_T030001 | AT3G18600 (0) | P-loop containing nucleoside triphosphate hydrolases superfamily protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000311 | formyltetrahydrofolate deformylase activity purine nucleotide binding cyanoalanine nitrilase activity phosphoenolpyruvate carboxykinase activity hydroxymethyl-, formyl- and related transferase activity 3-cyanoalanine hydratase activity cyanide detoxification I L-asparagine degradation I Glyoxylate and dicarboxylate metabolism cyanide catabolic process embryonic pattern specification detoxification of nitrogen compound superpathway of aspartate and asparagine biosynthesis myosin heavy chain kinase activity Pwp2p-containing subcomplex of 90S preribosome gluconeogenesis 'de novo' IMP biosynthetic process Cyanoamino acid metabolism snoRNA binding maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) amino acid binding mRNA surveillance pathway Ribosome biogenesis in eukaryotes cell division Ubiquitin_Proteasome_system, E3 adaptor: DWD | details |
| TreatCFM001325 | Endocytosis clathrin adaptor complex vesicle-mediated transport embryo development ending in seed dormancy pollen development intracellular protein transport | details |
| TreatCFM001470 | putrescine biosynthesis II putrescine biosynthetic process hydroxymethyl-, formyl- and related transferase activity agmatine deiminase activity protein-arginine deiminase activity formyltetrahydrofolate deformylase activity Glyoxylate and dicarboxylate metabolism 'de novo' IMP biosynthetic process structural constituent of ribosome Cul3-RING ubiquitin ligase complex mitochondrial small ribosomal subunit Arginine and proline metabolism large ribosomal subunit amino acid binding | details |
| TreatCFM001602 | isoleucyl-tRNA aminoacylation isoleucine-tRNA ligase activity aminoacyl-tRNA editing activity regulation of translational fidelity Aminoacyl-tRNA biosynthesis transcription factor TFIIE complex protein transmembrane transport protein localization to organelle transcription initiation from RNA polymerase II promoter protein channel activity cytosol Basal transcription factors translational initiation Ribosome biogenesis in eukaryotes Ubiquitin_Proteasome_system, E3 adaptor: DWD | details |
| TreatCFM001801 | positive regulation of transport RNA binding protein binding involved in protein folding Ribosome biogenesis in eukaryotes tRNA processing rRNA processing unfolded protein binding | details |
| TreatCFM001974 | fatty acid biosynthesis (plant mitochondria) anthocyanidin modification (Arabidopsis) ubiquitin-protein transferase activator activity anaphase-promoting complex binding Fatty acid metabolism Ubiquitin mediated proteolysis flavonoid biosynthetic process flavonoid glucuronidation regulation of catalytic activity fatty acid biosynthetic process cell division | details |
| TreatCFM002077 | Protein_kinases_phosphatases, PPC:2.1.3: CTR1/EDR1 Kinase Protein_kinases_phosphatases, PPC:4.2.1: Calcium Dependent Protein Kinase cysteinyl-tRNA aminoacylation cysteine-tRNA ligase activity peptidyl-lysine monomethylation protein-lysine N-methyltransferase activity abscisic acid-activated signaling pathway peptidyl-serine phosphorylation protein autophosphorylation calcium-dependent protein serine/threonine kinase activity calmodulin-dependent protein kinase activity Aminoacyl-tRNA biosynthesis MAPK signaling pathway - plant Plant-pathogen interaction intracellular signal transduction cytoplasm | details |
| TreatCFM002079 | transcription factor TFIIE complex Basal transcription factors transcription initiation from RNA polymerase II promoter vesicle-mediated transport translational initiation translation initiation factor activity | details |
Expression profiles
 Show details about module gene expression profiling |