TreatCFM002104's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| apoplast | 0.001854505 | GO:0048046 |
| peptidyl-arginine methylation | 0.009027955 | GO:0018216 |
| cellular response to extracellular stimulus | 0.009027955 | GO:0031668 |
| SUMO transferase activity | 0.01353693 | GO:0019789 |
| histone-arginine N-methyltransferase activity | 0.01353693 | GO:0008469 |
| protein-arginine omega-N asymmetric methyltransferase activity | 0.01353693 | GO:0035242 |
| hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc | 0.01556944 | cazy family |
| Transcription_related, Transcription regulator: PHD | 0.01556944 | TF family |
| protein sumoylation | 0.018045239 | GO:0016925 |
| cell growth | 0.020291896 | GO:0016049 |
| xyloglucan metabolic process | 0.024024791 | GO:0010411 |
| cell wall biogenesis | 0.024024791 | GO:0042546 |
| xyloglucan:xyloglucosyl transferase activity | 0.034913604 | GO:0016762 |
| aspartic-type endopeptidase activity | 0.041399923 | GO:0004190 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T001398 | AT1G29400 (2.00E-104) | AML5|MEI2-like protein 5 |
| CRO_T004533 | AT4G16570 (2.00E-43) | ATPRMT7|PROTEIN ARGININE METHYLTRANSFERASE 7 |
| CRO_T013203 | AT5G60410 (0) | ATSIZ1; SIZ1|DNA-binding protein with MIZ/SP-RING zinc finger, PHD-finger and SAP domain |
| CRO_T022859 | AT5G13870 (3.00E-132) | EXGT-A4|endoxyloglucan transferase A4; XTH5|xyloglucan endotransglucosylase/hydrolase 5 |
| CRO_T030466 | AT1G66180 (5.00E-18) | Eukaryotic aspartyl protease family protein |
| CRO_T033056 | AT4G30996 (1.00E-44) | NKS1|NA(+)- AND K(+)-SENSITIVE 1 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM001625 | Regulation of actin cytoskeleton histone-arginine N-methyltransferase activity protein-arginine omega-N asymmetric methyltransferase activity actin cytoskeleton Protein_kinases_phosphatases, PPC:3.1.1: Casein Kinase I Family protein serine/threonine kinase activity actin filament depolymerization peptidyl-arginine methylation Wnt signaling pathway regulation of cell shape Protein_kinases_phosphatases, PPC:4.5.2: CDC2 Like Kinase Family Endocytosis actin binding peptidyl-serine phosphorylation Transcription_related, Transcription factor: HB Ubiquitin_Proteasome_system, E3: U-box | details |
| TreatCFM001878 | Protein_kinases_phosphatases, PPC:2.1.5: ATN1 Like Family 3-phosphoinositide biosynthesis D-myo-inositol (1,4,5)-trisphosphate biosynthesis cellular response to extracellular stimulus SUMO transferase activity 1-phosphatidylinositol 4-kinase activity Transcription_related, Transcription regulator: PHD RNA polymerase II transcription cofactor activity cell growth phosphatidylinositol phosphorylation protein sumoylation response to salt stress protein autophosphorylation regulation of transcription from RNA polymerase II promoter protein peptidyl-prolyl isomerization Transcription_related, Transcription factor: NAC mediator complex peptidyl-prolyl cis-trans isomerase activity | details |
| TreatCFM001904 | apoplast cellular response to extracellular stimulus SUMO transferase activity hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Transcription_related, Transcription regulator: PHD protein sumoylation cell growth xyloglucan metabolic process cell wall biogenesis | details |
| TreatCFM001924 | Ras signaling pathway Protein_kinases_phosphatases, PPC:2.1.5: ATN1 Like Family 3-phosphoinositide biosynthesis D-myo-inositol (1,4,5)-trisphosphate biosynthesis peptidyl-arginine methylation cellular response to extracellular stimulus 1-phosphatidylinositol 4-kinase activity protein-arginine omega-N asymmetric methyltransferase activity SUMO transferase activity histone-arginine N-methyltransferase activity Transcription_related, Transcription regulator: PHD protein sumoylation cell growth phosphatidylinositol phosphorylation response to salt stress protein autophosphorylation zinc ion binding | details |
| TreatCFM001938 | Cell cycle DNA replication mRNA surveillance pathway | details |
| TreatCFM002005 | Protein_kinases_phosphatases, PPC:4.5.2: CDC2 Like Kinase Family intracellular distribution of mitochondria translational initiation | details |
| TreatCFM002074 | proteolysis L-alpha-amino acid transmembrane transport L-amino acid transport Ubiquitin_Proteasome_system, DUB: USP MicroRNAs in cancer cellular protein metabolic process cysteine-type peptidase activity L-amino acid transmembrane transporter activity metal ion binding aspartic-type endopeptidase activity antiporter activity | details |
| TreatCFM002110 | PI3K-Akt signaling pathway 2-polyprenyl-6-methoxy-1,4-benzoquinone methyltransferase activity polyprenyldihydroxybenzoate methyltransferase activity 3-demethylubiquinone-n 3-O-methyltransferase activity extrinsic component of mitochondrial inner membrane ubiquinone biosynthetic process aspartic-type endopeptidase activity flower development leaf development | details |
Expression profiles
 Show details about module gene expression profiling |