TreatCFM001625's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Regulation of actin cytoskeleton | 0.004955011 | KEGG pathway |
| histone-arginine N-methyltransferase activity | 0.016884963 | GO:0008469 |
| protein-arginine omega-N asymmetric methyltransferase activity | 0.016884963 | GO:0035242 |
| actin cytoskeleton | 0.017226269 | GO:0015629 |
| Protein_kinases_phosphatases, PPC:3.1.1: Casein Kinase I Family | 0.017226269 | kinase family |
| protein serine/threonine kinase activity | 0.017619199 | GO:0004674 |
| actin filament depolymerization | 0.017975131 | GO:0030042 |
| peptidyl-arginine methylation | 0.017975131 | GO:0018216 |
| Wnt signaling pathway | 0.017975131 | KEGG pathway |
| regulation of cell shape | 0.020211268 | GO:0008360 |
| Protein_kinases_phosphatases, PPC:4.5.2: CDC2 Like Kinase Family | 0.02150422 | kinase family |
| Endocytosis | 0.021547221 | KEGG pathway |
| actin binding | 0.034621933 | GO:0003779 |
| peptidyl-serine phosphorylation | 0.039551077 | GO:0018105 |
| Transcription_related, Transcription factor: HB | 0.042818276 | TF family |
| Ubiquitin_Proteasome_system, E3: U-box | 0.046108743 | ubs family |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T004533 | AT4G16570 (2.00E-43) | ATPRMT7|PROTEIN ARGININE METHYLTRANSFERASE 7 |
| CRO_T004624 | AT3G15430 (4.00E-15) | Regulator of chromosome condensation (RCC1) family protein |
| CRO_T011926 | AT1G28420 (0) | HB-1|homeobox-1; RLT1|RINGLET 1 |
| CRO_T026625 | AT5G43320 (2.00E-41) | ckl8|casein kinase I-like 8 |
| CRO_T030828 | AT3G46010 (1.00E-59) | ADF1|actin depolymerizing factor 1 |
| CRO_T030898 | AT5G10270 (0) | CDKC; 1|cyclin-dependent kinase C; 1 |
| CRO_T030966 | - | - |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM001472 | Transcription_related, Transcription factor: DBP flavin biosynthesis I (bacteria and plants) endoplasmic reticulum actin cytoskeleton actin filament depolymerization Transcription_related, Transcription factor: HB Regulation of actin cytoskeleton cell membrane part | details |
| TreatCFM001751 | formation of glycosidic bonds, GlycosylTransferases: GTnc Ubiquitin_Proteasome_system, E3: HECT histone ubiquitination DNA endoreduplication innate immune response chloride transport glycosaminoglycan biosynthetic process heparan sulfate proteoglycan biosynthetic process protein monoubiquitination actin filament depolymerization trichome branching reproductive structure development glucuronyl-galactosyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity glucuronosyl-N-acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity voltage-gated chloride channel activity Regulation of actin cytoskeleton regulation of anion transmembrane transport post-embryonic development Transcription_related, Transcription factor: C3H ion transmembrane transport Ubiquitin mediated proteolysis actin cytoskeleton single-organism cellular process protein ubiquitination involved in ubiquitin-dependent protein catabolic process actin binding metal ion binding | details |
| TreatCFM001924 | Ras signaling pathway Protein_kinases_phosphatases, PPC:2.1.5: ATN1 Like Family 3-phosphoinositide biosynthesis D-myo-inositol (1,4,5)-trisphosphate biosynthesis peptidyl-arginine methylation cellular response to extracellular stimulus 1-phosphatidylinositol 4-kinase activity protein-arginine omega-N asymmetric methyltransferase activity SUMO transferase activity histone-arginine N-methyltransferase activity Transcription_related, Transcription regulator: PHD protein sumoylation cell growth phosphatidylinositol phosphorylation response to salt stress protein autophosphorylation zinc ion binding | details |
| TreatCFM002005 | Protein_kinases_phosphatases, PPC:4.5.2: CDC2 Like Kinase Family intracellular distribution of mitochondria translational initiation | details |
| TreatCFM002104 | apoplast peptidyl-arginine methylation cellular response to extracellular stimulus SUMO transferase activity histone-arginine N-methyltransferase activity protein-arginine omega-N asymmetric methyltransferase activity hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Transcription_related, Transcription regulator: PHD protein sumoylation cell growth xyloglucan metabolic process cell wall biogenesis xyloglucan:xyloglucosyl transferase activity aspartic-type endopeptidase activity | details |
Expression profiles
 Show details about module gene expression profiling |