TreatCFM001878's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Protein_kinases_phosphatases, PPC:2.1.5: ATN1 Like Family | 0.007386615 | kinase family |
| 3-phosphoinositide biosynthesis | 0.009551151 | plantCyc |
| D-myo-inositol (1,4,5)-trisphosphate biosynthesis | 0.009551151 | plantCyc |
| cellular response to extracellular stimulus | 0.01038718 | GO:0031668 |
| SUMO transferase activity | 0.013539931 | GO:0019789 |
| 1-phosphatidylinositol 4-kinase activity | 0.013539931 | GO:0004430 |
| Transcription_related, Transcription regulator: PHD | 0.02359006 | TF family |
| RNA polymerase II transcription cofactor activity | 0.024053209 | GO:0001104 |
| cell growth | 0.031110925 | GO:0016049 |
| phosphatidylinositol phosphorylation | 0.031110925 | GO:0046854 |
| protein sumoylation | 0.031110925 | GO:0016925 |
| response to salt stress | 0.031700464 | GO:0009651 |
| protein autophosphorylation | 0.031700464 | GO:0046777 |
| regulation of transcription from RNA polymerase II promoter | 0.031700464 | GO:0006357 |
| protein peptidyl-prolyl isomerization | 0.031700464 | GO:0000413 |
| Transcription_related, Transcription factor: NAC | 0.036255345 | TF family |
| mediator complex | 0.041294808 | GO:0016592 |
| peptidyl-prolyl cis-trans isomerase activity | 0.047263877 | GO:0003755 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T002139 | AT1G01720 (2.00E-40) | ANAC002|Arabidopsis NAC domain containing protein 2 |
| CRO_T013203 | AT5G60410 (0) | ATSIZ1; SIZ1|DNA-binding protein with MIZ/SP-RING zinc finger, PHD-finger and SAP domain |
| CRO_T017479 | AT5G01850 (3.00E-54) | Protein kinase superfamily protein |
| CRO_T018826 | AT2G28230 (2.00E-40) | TATA-binding related factor (TRF) of subunit 20 of Mediator complex |
| CRO_T025368 | AT3G44600 (5.00E-30) | CYP71|cyclophilin 71 |
| CRO_T029189 | AT5G24240 (0) | Phosphatidylinositol 3- and 4-kinase ; Ubiquitin family protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000339 | DNA ligation protein initiator methionine removal polynucleotide 5' dephosphorylation 7-methylguanosine mRNA capping polynucleotide 5'-phosphatase activity mRNA guanylyltransferase activity metalloaminopeptidase activity 1-phosphatidylinositol 4-kinase activity protein tyrosine/serine/threonine phosphatase activity DNA ligase (ATP) activity mRNA surveillance pathway 3-phosphoinositide biosynthesis D-myo-inositol (1,4,5)-trisphosphate biosynthesis homogalacturonan degradation hydrolysis of carbohydrate esters, Carbohydrate Esterases: CE8 Transcription_related, Transcription factor: NAC protein tyrosine phosphatase activity cytosolic ribosome phosphatidylinositol phosphorylation DNA recombination peptidyl-tyrosine dephosphorylation protein peptidyl-prolyl isomerization | details |
| TreatCFM001415 | cytosol inosine biosynthetic process hypoxanthine salvage adenosine catabolic process 4-aminobutanoate degradation I 4-aminobutanoate degradation IV exocyst assembly exocyst localization Autophagy - animal Butanoate metabolism nucleophagy autophagosome assembly adenosine deaminase activity 1-phosphatidylinositol 4-kinase activity L-glutamate degradation IV D-myo-inositol (1,4,5)-trisphosphate biosynthesis 3-phosphoinositide biosynthesis phosphatidylinositol phosphorylation transaminase activity exocyst protein autophosphorylation response to salt stress identical protein binding | details |
| TreatCFM001639 | endoribonuclease activity RNA-3'-phosphate cyclase activity transcription corepressor activity endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) negative regulation of nucleic acid-templated transcription cellular response to phosphate starvation RNA polymerase II transcription cofactor activity autophagy Autophagy - animal Ribosome biogenesis in eukaryotes regulation of transcription from RNA polymerase II promoter mediator complex | details |
| TreatCFM001904 | apoplast cellular response to extracellular stimulus SUMO transferase activity hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Transcription_related, Transcription regulator: PHD protein sumoylation cell growth xyloglucan metabolic process cell wall biogenesis | details |
| TreatCFM001924 | Ras signaling pathway Protein_kinases_phosphatases, PPC:2.1.5: ATN1 Like Family 3-phosphoinositide biosynthesis D-myo-inositol (1,4,5)-trisphosphate biosynthesis peptidyl-arginine methylation cellular response to extracellular stimulus 1-phosphatidylinositol 4-kinase activity protein-arginine omega-N asymmetric methyltransferase activity SUMO transferase activity histone-arginine N-methyltransferase activity Transcription_related, Transcription regulator: PHD protein sumoylation cell growth phosphatidylinositol phosphorylation response to salt stress protein autophosphorylation zinc ion binding | details |
| TreatCFM002071 | phosphatidylinositol-mediated signaling proteolysis protein initiator methionine removal metalloaminopeptidase activity 1-phosphatidylinositol 4-kinase activity phosphatidylinositol dephosphorylation hydrolysis of carbohydrate esters, Carbohydrate Esterases: CE8 cytosolic ribosome Cell cycle - Caulobacter Inositol phosphate metabolism phosphatidylinositol phosphorylation 3-phosphoinositide biosynthesis D-myo-inositol (1,4,5)-trisphosphate biosynthesis D-myo-inositol (1,4,5)-trisphosphate degradation homogalacturonan degradation protein peptidyl-prolyl isomerization peptidyl-prolyl cis-trans isomerase activity protein folding | details |
| TreatCFM002104 | apoplast peptidyl-arginine methylation cellular response to extracellular stimulus SUMO transferase activity histone-arginine N-methyltransferase activity protein-arginine omega-N asymmetric methyltransferase activity hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Transcription_related, Transcription regulator: PHD protein sumoylation cell growth xyloglucan metabolic process cell wall biogenesis xyloglucan:xyloglucosyl transferase activity aspartic-type endopeptidase activity | details |
Expression profiles
 Show details about module gene expression profiling |