TreatCFM002125's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| N-terminal peptidyl-glutamic acid acetylation | 0.002606229 | GO:0018002 |
| N-terminal peptidyl-serine acetylation | 0.002606229 | GO:0017198 |
| internal protein amino acid acetylation | 0.002606229 | GO:0006475 |
| peptide-glutamate-N-acetyltransferase activity | 0.004826842 | GO:1990190 |
| peptide-serine-N-acetyltransferase activity | 0.004826842 | GO:1990189 |
| NatA complex | 0.009653685 | GO:0031415 |
| acyl-CoA hydrolysis | 0.0132908 | plantCyc |
| RNA polymerase I activity | 0.017679603 | GO:0001054 |
| cytosolic ribosome | 0.01928456 | GO:0022626 |
| DNA-directed RNA polymerase I complex | 0.01928456 | GO:0005736 |
| DNA-directed RNA polymerase III complex | 0.02167975 | GO:0005666 |
| RNA polymerase III activity | 0.02167975 | GO:0001056 |
| large ribosomal subunit | 0.025988046 | GO:0015934 |
| cutin biosynthesis | 0.028684654 | plantCyc |
| sporopollenin precursors biosynthesis | 0.028684654 | plantCyc |
| suberin monomers biosynthesis | 0.029735181 | plantCyc |
| Protein_kinases_phosphatases, PPC:1.9.2: S Domain Kinase (Type 2) | 0.044125025 | kinase family |
| Transcription_related, Transcription regulator: GNAT | 0.044125025 | TF family |
| Peroxisome | 0.045557977 | KEGG pathway |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T002703 | AT5G35370 (0) | S-locus lectin protein kinase family protein |
| CRO_T009118 | AT1G03150 (1.00E-23) | Acyl-CoA N-acyltransferases (NAT) superfamily protein |
| CRO_T013677 | AT2G29540 (2.00E-17) | ATRPC14|RNApolymerase 14 kDa subunit |
| CRO_T017099 | AT1G04290 (3.00E-34) | Thioesterase superfamily protein |
| CRO_T020770 | AT5G64650 (3.00E-68) | Ribosomal protein L17 family protein |
| CRO_T021978 | AT5G65950 (1.00E-92) | unknown protein |
| CRO_T024914 | AT3G62810 (1.00E-36) | complex 1 family protein / LVR family protein |
| CRO_T028135 | AT5G65495 (2.00E-08) | unknown protein |
| CRO_T030978 | - | - |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000479 | Ubiquitin_Proteasome_system, DUB: USP protein secretion protein deubiquitination | details |
| TreatCFM001525 | anthocyanidin modification (Arabidopsis) anthocyanin biosynthesis anthocyanin biosynthesis (delphinidin 3-O-glucoside) anthocyanin biosynthesis (pelargonidin 3-O-glucoside) cellulose biosynthesis quercetin glucoside biosynthesis (Allium) quercetin gentiotetraside biosynthesis plant-type secondary cell wall biogenesis microtubule cytoskeleton organization cytokinesis response to osmotic stress defense response to fungus cellulose biosynthetic process response to water deprivation defense response to bacterium multicellular organism development formation of glycosidic bonds, GlycosylTransferases: GTnc Protein_kinases_phosphatases, PPC:1.9.2: S Domain Kinase (Type 2) | details |
| TreatCFM001528 | fatty acid biosynthesis initiation I peptide-glutamate-N-acetyltransferase activity beta-ketoacyl-acyl-carrier-protein synthase III activity peptide-serine-N-acetyltransferase activity 3-oxoacyl-[acyl-carrier-protein] synthase activity formation of glycosidic bonds, GlycosylTransferases: GTnc double-stranded RNA binding Hedgehog signaling pathway Other types of O-glycan biosynthesis N-terminal peptidyl-serine acetylation internal protein amino acid acetylation N-terminal peptidyl-glutamic acid acetylation DNA clamp loader activity ribonuclease III activity Ubiquitin_Proteasome_system, SOCS/VHL/BC-box: 3-box histone acetyltransferase complex macromolecular complex AP-type membrane coat adaptor complex NatA complex endoplasmic reticulum Transcription_related, Transcription regulator: TRAF endosomal transport karyogamy Golgi vesicle prefusion complex stabilization DNA replication factor C complex retrograde transport, vesicle recycling within Golgi Transcription_related, Transcription regulator: GNAT DNA-dependent DNA replication cellular component organization cytosolic ribosome Golgi transport complex | details |
| TreatCFM001536 | Transcription_related, Transcription factor: ARF | details |
| TreatCFM001648 | formation of glycosidic bonds, GlycosylTransferases: GTnc acyl-CoA hydrolysis Glycosylphosphatidylinositol(GPI)-anchor biosynthesis cutin biosynthesis sporopollenin precursors biosynthesis gibberellic acid mediated signaling pathway retrograde transport, vesicle recycling within Golgi cytokinin-activated signaling pathway suberin monomers biosynthesis regulation of reactive oxygen species metabolic process retrograde vesicle-mediated transport, Golgi to ER negative regulation of gibberellic acid mediated signaling pathway vesicle docking cytoplasmic translation protein glycosylation ER to Golgi vesicle-mediated transport exocytosis Golgi transport complex cis-Golgi network exocyst cytosol transferase activity, transferring glycosyl groups protein transporter activity | details |
| TreatCFM001671 | 2-oxoglutarate decarboxylation to succinyl-CoA Transcription_related, Transcription factor: LOB carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity oxoglutarate dehydrogenase (succinyl-transferring) activity thiamine pyrophosphate binding membrane coat lyase activity S-adenosylmethionine-dependent methyltransferase activity Lysosome Peroxisome | details |
| TreatCFM001741 | Apelin signaling pathway long-distance posttranscriptional gene silencing production of siRNA involved in chromatin silencing by small RNA peptide catabolic process cell-cell signaling production of siRNA involved in RNA interference transcription, RNA-templated nucleic acid binding peptide binding RNA-directed RNA polymerase activity metalloaminopeptidase activity N-1-naphthylphthalamic acid binding acyl-CoA hydrolysis autophagy defense response to fungus cutin biosynthesis sporopollenin precursors biosynthesis suberin monomers biosynthesis | details |
| TreatCFM001753 | N-terminal peptidyl-serine acetylation N-terminal peptidyl-glutamic acid acetylation internal protein amino acid acetylation peptide-serine-N-acetyltransferase activity peptide-glutamate-N-acetyltransferase activity double-stranded RNA binding snRNA stem-loop binding U1 snRNA binding Transcription_related, Transcription regulator: GNAT karyogamy endosomal transport NatA complex AP-type membrane coat adaptor complex ribonuclease III activity cytosolic ribosome U1 snRNP RNA phosphodiester bond hydrolysis, endonucleolytic viral nucleocapsid RNA processing mRNA splicing, via spliceosome Spliceosome | details |
| TreatCFM001757 | internal protein amino acid acetylation N-terminal peptidyl-serine acetylation N-terminal peptidyl-glutamic acid acetylation endosomal transport peptide-glutamate-N-acetyltransferase activity peptide-serine-N-acetyltransferase activity NatA complex AP-type membrane coat adaptor complex U1 snRNA binding snRNA stem-loop binding NLS-bearing protein import into nucleus nucleotide binding U1 snRNP cytosolic ribosome nuclear localization sequence binding Protein_kinases_phosphatases, PPC:1.9.2: S Domain Kinase (Type 2) Transcription_related, Transcription regulator: GNAT nucleoplasm nuclear pore viral nucleocapsid mRNA splicing, via spliceosome Spliceosome protein transporter activity | details |
| TreatCFM002022 | mitochondrial alanyl-tRNA aminoacylation Aminoacyl-tRNA biosynthesis alanine-tRNA ligase activity tRNA binding tRNA modification ER to Golgi vesicle-mediated transport Protein_kinases_phosphatases, PPC:1.9.2: S Domain Kinase (Type 2) | details |
Expression profiles
 Show details about module gene expression profiling |