TreatCFM001757's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| internal protein amino acid acetylation | 0.002145549 | GO:0006475 |
| N-terminal peptidyl-serine acetylation | 0.002145549 | GO:0017198 |
| N-terminal peptidyl-glutamic acid acetylation | 0.002145549 | GO:0018002 |
| endosomal transport | 0.004826058 | GO:0016197 |
| peptide-glutamate-N-acetyltransferase activity | 0.00519359 | GO:1990190 |
| peptide-serine-N-acetyltransferase activity | 0.00519359 | GO:1990189 |
| NatA complex | 0.006771466 | GO:0031415 |
| AP-type membrane coat adaptor complex | 0.006771466 | GO:0030119 |
| U1 snRNA binding | 0.007788082 | GO:0030619 |
| snRNA stem-loop binding | 0.007788082 | GO:0035614 |
| NLS-bearing protein import into nucleus | 0.010287985 | GO:0006607 |
| nucleotide binding | 0.011929682 | GO:0000166 |
| U1 snRNP | 0.01353393 | GO:0005685 |
| cytosolic ribosome | 0.01353393 | GO:0022626 |
| nuclear localization sequence binding | 0.01556236 | GO:0008139 |
| Protein_kinases_phosphatases, PPC:1.9.2: S Domain Kinase (Type 2) | 0.0194503 | kinase family |
| Transcription_related, Transcription regulator: GNAT | 0.0194503 | TF family |
| nucleoplasm | 0.019528798 | GO:0005654 |
| nuclear pore | 0.019528798 | GO:0005643 |
| viral nucleocapsid | 0.021876488 | GO:0019013 |
| mRNA splicing, via spliceosome | 0.026191859 | GO:0000398 |
| Spliceosome | 0.029426413 | KEGG pathway |
| protein transporter activity | 0.03770227 | GO:0008565 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000366 | AT1G09270 (4.00E-07) | IMPA-4|importin alpha isoform 4 |
| CRO_T002703 | AT5G35370 (0) | S-locus lectin protein kinase family protein |
| CRO_T006211 | AT3G19870 (4.00E-123) | unknown protein |
| CRO_T009118 | AT1G03150 (1.00E-23) | Acyl-CoA N-acyltransferases (NAT) superfamily protein |
| CRO_T014961 | - | - |
| CRO_T031540 | AT1G06960 (4.00E-20) | RNA-binding (RRM/RBD/RNP motifs) family protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM001468 | Protein_kinases_phosphatases, PPC:4.5.1.1: Male grem cell-associated kinase (mak) L-glutamine degradation I L-histidine biosynthesis ligase activity 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity oxo-acid-lyase activity galactosylxylosylprotein 3-beta-galactosyltransferase activity imidazoleglycerol-phosphate synthase activity protein O-linked glycosylation via hydroxyproline arabinogalactan protein metabolic process Transcription_related, Transcription factor: MIKC formation of glycosidic bonds, GlycosylTransferases: GTnc | details |
| TreatCFM001525 | anthocyanidin modification (Arabidopsis) anthocyanin biosynthesis anthocyanin biosynthesis (delphinidin 3-O-glucoside) anthocyanin biosynthesis (pelargonidin 3-O-glucoside) cellulose biosynthesis quercetin glucoside biosynthesis (Allium) quercetin gentiotetraside biosynthesis plant-type secondary cell wall biogenesis microtubule cytoskeleton organization cytokinesis response to osmotic stress defense response to fungus cellulose biosynthetic process response to water deprivation defense response to bacterium multicellular organism development formation of glycosidic bonds, GlycosylTransferases: GTnc Protein_kinases_phosphatases, PPC:1.9.2: S Domain Kinase (Type 2) | details |
| TreatCFM001528 | fatty acid biosynthesis initiation I peptide-glutamate-N-acetyltransferase activity beta-ketoacyl-acyl-carrier-protein synthase III activity peptide-serine-N-acetyltransferase activity 3-oxoacyl-[acyl-carrier-protein] synthase activity formation of glycosidic bonds, GlycosylTransferases: GTnc double-stranded RNA binding Hedgehog signaling pathway Other types of O-glycan biosynthesis N-terminal peptidyl-serine acetylation internal protein amino acid acetylation N-terminal peptidyl-glutamic acid acetylation DNA clamp loader activity ribonuclease III activity Ubiquitin_Proteasome_system, SOCS/VHL/BC-box: 3-box histone acetyltransferase complex macromolecular complex AP-type membrane coat adaptor complex NatA complex endoplasmic reticulum Transcription_related, Transcription regulator: TRAF endosomal transport karyogamy Golgi vesicle prefusion complex stabilization DNA replication factor C complex retrograde transport, vesicle recycling within Golgi Transcription_related, Transcription regulator: GNAT DNA-dependent DNA replication cellular component organization cytosolic ribosome Golgi transport complex | details |
| TreatCFM001753 | N-terminal peptidyl-serine acetylation N-terminal peptidyl-glutamic acid acetylation internal protein amino acid acetylation peptide-serine-N-acetyltransferase activity peptide-glutamate-N-acetyltransferase activity double-stranded RNA binding snRNA stem-loop binding U1 snRNA binding Transcription_related, Transcription regulator: GNAT karyogamy endosomal transport NatA complex AP-type membrane coat adaptor complex ribonuclease III activity cytosolic ribosome U1 snRNP RNA phosphodiester bond hydrolysis, endonucleolytic viral nucleocapsid RNA processing mRNA splicing, via spliceosome Spliceosome | details |
| TreatCFM002022 | mitochondrial alanyl-tRNA aminoacylation Aminoacyl-tRNA biosynthesis alanine-tRNA ligase activity tRNA binding tRNA modification ER to Golgi vesicle-mediated transport Protein_kinases_phosphatases, PPC:1.9.2: S Domain Kinase (Type 2) | details |
| TreatCFM002099 | DNA-7-methylguanine glycosylase activity DNA-3-methylguanine glycosylase activity DNA-7-methyladenine glycosylase activity DNA-3-methyladenine glycosylase activity U1 snRNA binding snRNA stem-loop binding U1 snRNP protein domain specific binding viral nucleocapsid base-excision repair Base excision repair MAPK signaling pathway - yeast mRNA splicing, via spliceosome | details |
| TreatCFM002125 | N-terminal peptidyl-glutamic acid acetylation N-terminal peptidyl-serine acetylation internal protein amino acid acetylation peptide-glutamate-N-acetyltransferase activity peptide-serine-N-acetyltransferase activity NatA complex acyl-CoA hydrolysis RNA polymerase I activity cytosolic ribosome DNA-directed RNA polymerase I complex DNA-directed RNA polymerase III complex RNA polymerase III activity large ribosomal subunit cutin biosynthesis sporopollenin precursors biosynthesis suberin monomers biosynthesis Protein_kinases_phosphatases, PPC:1.9.2: S Domain Kinase (Type 2) Transcription_related, Transcription regulator: GNAT Peroxisome | details |
Expression profiles
 Show details about module gene expression profiling |