TreatCFM001753's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| N-terminal peptidyl-serine acetylation | 0.002570268 | GO:0017198 |
| N-terminal peptidyl-glutamic acid acetylation | 0.002570268 | GO:0018002 |
| internal protein amino acid acetylation | 0.002570268 | GO:0006475 |
| peptide-serine-N-acetyltransferase activity | 0.003218323 | GO:1990189 |
| peptide-glutamate-N-acetyltransferase activity | 0.003218323 | GO:1990190 |
| double-stranded RNA binding | 0.004503988 | GO:0003725 |
| snRNA stem-loop binding | 0.004503988 | GO:0035614 |
| U1 snRNA binding | 0.004503988 | GO:0030619 |
| Transcription_related, Transcription regulator: GNAT | 0.004602101 | TF family |
| karyogamy | 0.004625114 | GO:0000741 |
| endosomal transport | 0.004625114 | GO:0016197 |
| NatA complex | 0.005782675 | GO:0031415 |
| AP-type membrane coat adaptor complex | 0.005782675 | GO:0030119 |
| ribonuclease III activity | 0.006967367 | GO:0004525 |
| cytosolic ribosome | 0.011557661 | GO:0022626 |
| U1 snRNP | 0.011557661 | GO:0005685 |
| RNA phosphodiester bond hydrolysis, endonucleolytic | 0.019876937 | GO:0090502 |
| viral nucleocapsid | 0.026154816 | GO:0019013 |
| RNA processing | 0.026402295 | GO:0006396 |
| mRNA splicing, via spliceosome | 0.026402295 | GO:0000398 |
| Spliceosome | 0.029426413 | KEGG pathway |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T006211 | AT3G19870 (4.00E-123) | unknown protein |
| CRO_T009118 | AT1G03150 (1.00E-23) | Acyl-CoA N-acyltransferases (NAT) superfamily protein |
| CRO_T022744 | AT1G24450 (2.00E-39) | NFD2|NUCLEAR FUSION DEFECTIVE 2 |
| CRO_T030937 | - | - |
| CRO_T031540 | AT1G06960 (4.00E-20) | RNA-binding (RRM/RBD/RNP motifs) family protein |
| CRO_T032807 | AT2G28790 (4.00E-101) | Pathogenesis-related thaumatin superfamily protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM001528 | fatty acid biosynthesis initiation I peptide-glutamate-N-acetyltransferase activity beta-ketoacyl-acyl-carrier-protein synthase III activity peptide-serine-N-acetyltransferase activity 3-oxoacyl-[acyl-carrier-protein] synthase activity formation of glycosidic bonds, GlycosylTransferases: GTnc double-stranded RNA binding Hedgehog signaling pathway Other types of O-glycan biosynthesis N-terminal peptidyl-serine acetylation internal protein amino acid acetylation N-terminal peptidyl-glutamic acid acetylation DNA clamp loader activity ribonuclease III activity Ubiquitin_Proteasome_system, SOCS/VHL/BC-box: 3-box histone acetyltransferase complex macromolecular complex AP-type membrane coat adaptor complex NatA complex endoplasmic reticulum Transcription_related, Transcription regulator: TRAF endosomal transport karyogamy Golgi vesicle prefusion complex stabilization DNA replication factor C complex retrograde transport, vesicle recycling within Golgi Transcription_related, Transcription regulator: GNAT DNA-dependent DNA replication cellular component organization cytosolic ribosome Golgi transport complex | details |
| TreatCFM001757 | internal protein amino acid acetylation N-terminal peptidyl-serine acetylation N-terminal peptidyl-glutamic acid acetylation endosomal transport peptide-glutamate-N-acetyltransferase activity peptide-serine-N-acetyltransferase activity NatA complex AP-type membrane coat adaptor complex U1 snRNA binding snRNA stem-loop binding NLS-bearing protein import into nucleus nucleotide binding U1 snRNP cytosolic ribosome nuclear localization sequence binding Protein_kinases_phosphatases, PPC:1.9.2: S Domain Kinase (Type 2) Transcription_related, Transcription regulator: GNAT nucleoplasm nuclear pore viral nucleocapsid mRNA splicing, via spliceosome Spliceosome protein transporter activity | details |
| TreatCFM002099 | DNA-7-methylguanine glycosylase activity DNA-3-methylguanine glycosylase activity DNA-7-methyladenine glycosylase activity DNA-3-methyladenine glycosylase activity U1 snRNA binding snRNA stem-loop binding U1 snRNP protein domain specific binding viral nucleocapsid base-excision repair Base excision repair MAPK signaling pathway - yeast mRNA splicing, via spliceosome | details |
| TreatCFM002125 | N-terminal peptidyl-glutamic acid acetylation N-terminal peptidyl-serine acetylation internal protein amino acid acetylation peptide-glutamate-N-acetyltransferase activity peptide-serine-N-acetyltransferase activity NatA complex acyl-CoA hydrolysis RNA polymerase I activity cytosolic ribosome DNA-directed RNA polymerase I complex DNA-directed RNA polymerase III complex RNA polymerase III activity large ribosomal subunit cutin biosynthesis sporopollenin precursors biosynthesis suberin monomers biosynthesis Protein_kinases_phosphatases, PPC:1.9.2: S Domain Kinase (Type 2) Transcription_related, Transcription regulator: GNAT Peroxisome | details |
Expression profiles
 Show details about module gene expression profiling |