TreatCFM002148's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Renin-angiotensin system | 0.004253747 | KEGG pathway |
| S-methyl-5-thio-α-D-ribose 1-phosphate degradation | 0.004871565 | plantCyc |
| L-leucine biosynthesis | 0.004871565 | plantCyc |
| L-leucine degradation I | 0.004871565 | plantCyc |
| peptide hormone binding | 0.01038411 | GO:0017046 |
| peptide-methionine (S)-S-oxide reductase activity | 0.01038411 | GO:0008113 |
| dipeptidyl-peptidase activity | 0.01038411 | GO:0008239 |
| xylem and phloem pattern formation | 0.015572712 | GO:0010051 |
| protein repair | 0.015572712 | GO:0030091 |
| nitrate import | 0.015572712 | GO:1902025 |
| Protein_kinases_phosphatases, PPC:1.12.4: Leucine Rich Repeat Kinase XI & XII | 0.017079564 | kinase family |
| Plant-pathogen interaction | 0.020104048 | KEGG pathway |
| MAP kinase kinase kinase activity | 0.020746747 | GO:0004709 |
| ADP binding | 0.020746747 | GO:0043531 |
| activation of MAPKK activity | 0.025933434 | GO:0000186 |
| serine-type carboxypeptidase activity | 0.030222161 | GO:0004185 |
| MAPK cascade | 0.037300026 | GO:0000165 |
| drug transmembrane transporter activity | 0.042001962 | GO:0015238 |
| antiporter activity | 0.042001962 | GO:0015297 |
| 2-alkenal reductase [NAD(P)] activity | 0.043617866 | GO:0032440 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000049 | AT5G65760 (0) | Serine carboxypeptidase S28 family protein |
| CRO_T001983 | AT4G25130 (9.00E-95) | MSRA4|methionine sulfoxide reductase A4; PMSR4|peptide met sulfoxide reductase 4 |
| CRO_T006883 | AT5G53400 (2.00E-82) | BOB1|BOBBER1 |
| CRO_T012293 | AT5G49660 (0) | XIP1|XYLEM INTERMIXED WITH PHLOEM 1 |
| CRO_T017888 | AT3G07040 (2.00E-82) | RPM1|RESISTANCE TO P. SYRINGAE PV MACULICOLA 1; RPS3|RESISTANCE TO PSEUDOMONAS SYRINGAE 3 |
| CRO_T030297 | AT5G65380 (1.00E-107) | MATE efflux family protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM001517 | Plant-pathogen interaction Cytochrome_P450, Cytochrome P450: CYP81K folate polyglutamylation II glutamate removal from folates UDP-D-galactose biosynthesis UDP-L-arabinose biosynthesis I (from UDP-xylose) peptide-methionine (S)-S-oxide reductase activity gamma-glutamyl-peptidase activity Cytochrome_P450, Cytochrome P450: CYP81D UDP-glucose 4-epimerase activity D-galactose degradation III Cell cycle - yeast Folate biosynthesis tetrahydrofolylpolyglutamate metabolic process chromosome condensation condensed chromosome microtubule cytoskeleton cytoskeletal part UDP-sugars interconversion stachyose degradation Galactose metabolism ADP binding sesamin biosynthesis protein repair indole glucosinolate metabolic process defense response to other organism mitotic nuclear division galactose metabolic process glutamine metabolic process | details |
| TreatCFM001899 | GABAergic synapse Renin-angiotensin system trehalose-phosphatase activity dipeptidyl-peptidase activity S-methyl-5-thio-α-D-ribose 1-phosphate degradation L-leucine biosynthesis L-leucine degradation I pentose phosphate pathway (non-oxidative branch) UDP-glucosyltransferase activity serine-type carboxypeptidase activity flavonoid metabolic process trehalose biosynthetic process Rubisco shunt pyrimidine ribonucleotides interconversion triacylglycerol degradation lipid metabolic process dephosphorylation formation of glycosidic bonds, GlycosylTransferases: GTnc | details |
| TreatCFM002106 | UDP-D-galacturonate biosynthesis II (from D-galacturonate) Antigen processing and presentation phosphotransferase activity, alcohol group as acceptor Amino sugar and nucleotide sugar metabolism | details |
| TreatCFM002121 | Amyotrophic lateral sclerosis (ALS) Renin-angiotensin system S-methyl-5-thio-α-D-ribose 1-phosphate degradation L-leucine biosynthesis L-leucine degradation I beta-sitosterol UDP-glucosyltransferase activity dipeptidyl-peptidase activity superoxide dismutase activity lipid glycosylation pyrimidine ribonucleotides interconversion seed development removal of superoxide radicals sterol metabolic process serine-type carboxypeptidase activity translational initiation chloroplast RNA transport translation initiation factor activity | details |
| TreatCFM002154 | Cell cycle - Caulobacter serine-type endopeptidase activity ADP binding protein-lysine N-methyltransferase activity proteolysis response to reactive oxygen species Transcription_related, Transcription regulator: SET peptidyl-lysine monomethylation regulation of gene expression Plant-pathogen interaction defense response | details |
Expression profiles
 Show details about module gene expression profiling |