TreatCFM002154's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Cell cycle - Caulobacter | 2.17E-05 | KEGG pathway |
| serine-type endopeptidase activity | 0.000666076 | GO:0004252 |
| ADP binding | 0.005195952 | GO:0043531 |
| protein-lysine N-methyltransferase activity | 0.005195952 | GO:0016279 |
| proteolysis | 0.006071349 | GO:0006508 |
| response to reactive oxygen species | 0.006071349 | GO:0000302 |
| Transcription_related, Transcription regulator: SET | 0.006191018 | TF family |
| peptidyl-lysine monomethylation | 0.008091544 | GO:0018026 |
| regulation of gene expression | 0.00960374 | GO:0010468 |
| Plant-pathogen interaction | 0.020104048 | KEGG pathway |
| defense response | 0.032604129 | GO:0006952 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000163 | AT1G11960 (0) | ERD (early-responsive to dehydration stress) family protein |
| CRO_T000529 | AT1G11750 (1.00E-71) | CLPP6|CLP protease proteolytic subunit 6; NCLPP1|NUCLEAR-ENCODED CLPP 1 |
| CRO_T005576 | AT2G18850 (2.00E-141) | SET domain-containing protein |
| CRO_T017888 | AT3G07040 (2.00E-82) | RPM1|RESISTANCE TO P. SYRINGAE PV MACULICOLA 1; RPS3|RESISTANCE TO PSEUDOMONAS SYRINGAE 3 |
| CRO_T018581 | AT3G50950 (4.00E-48) | ZAR1|HOPZ-ACTIVATED RESISTANCE 1 |
| CRO_T021644 | AT4G17040 (1.00E-106) | CLPR4|CLP protease R subunit 4; HON5|happy on norflurazon 5 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM001465 | proteolysis response to reactive oxygen species regulation of gene expression methylated histone binding AMPK signaling pathway Cell cycle - Caulobacter translational elongation Transcription_related, Transcription regulator: TRAF Ubiquitin_Proteasome_system, E3 adaptor: BTB ATP-dependent peptidase activity translation elongation factor activity | details |
| TreatCFM001517 | Plant-pathogen interaction Cytochrome_P450, Cytochrome P450: CYP81K folate polyglutamylation II glutamate removal from folates UDP-D-galactose biosynthesis UDP-L-arabinose biosynthesis I (from UDP-xylose) peptide-methionine (S)-S-oxide reductase activity gamma-glutamyl-peptidase activity Cytochrome_P450, Cytochrome P450: CYP81D UDP-glucose 4-epimerase activity D-galactose degradation III Cell cycle - yeast Folate biosynthesis tetrahydrofolylpolyglutamate metabolic process chromosome condensation condensed chromosome microtubule cytoskeleton cytoskeletal part UDP-sugars interconversion stachyose degradation Galactose metabolism ADP binding sesamin biosynthesis protein repair indole glucosinolate metabolic process defense response to other organism mitotic nuclear division galactose metabolic process glutamine metabolic process | details |
| TreatCFM001846 | catalytic complex intracellular non-membrane-bounded organelle nuclear lumen 3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity protein-lysine N-methyltransferase activity fatty acid elongation -- saturated octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast) developmental process involved in reproduction stearate biosynthesis II (bacteria and plants) peptidyl-lysine monomethylation palmitate biosynthesis II (bacteria and plants) Transcription_related, Transcription regulator: PHD Transcription_related, Transcription regulator: SET Transcription_related, Transcription factor: C2H2 | details |
| TreatCFM002034 | peptidyl-tyrosine dephosphorylation phosphate acquisition redox enzymes that act in conjunction with CAZymes, Auxiliary Activities: AA7 protein tyrosine phosphatase activity | details |
| TreatCFM002106 | UDP-D-galacturonate biosynthesis II (from D-galacturonate) Antigen processing and presentation phosphotransferase activity, alcohol group as acceptor Amino sugar and nucleotide sugar metabolism | details |
| TreatCFM002122 | proteolysis serine-type endopeptidase activity gamma-glutamyl-peptidase activity folate polyglutamylation II glutamate removal from folates glutathione peroxidase activity tetrahydrofolylpolyglutamate metabolic process protein-lysine N-methyltransferase activity glutathione-peroxide redox reactions reactive oxygen species degradation Arachidonic acid metabolism Cell cycle - Caulobacter Folate biosynthesis response to reactive oxygen species Transcription_related, Transcription regulator: PHD Transcription_related, Transcription regulator: SET peptidyl-lysine monomethylation glutamine metabolic process regulation of gene expression | details |
| TreatCFM002130 | tRNA (m1A) methyltransferase complex vindoline and vinblastine biosynthesis Stilbenoid, diarylheptanoid and gingerol biosynthesis cation binding 11-O-demethyl-17-O-deacetylvindoline O-methyltransferase activity protein-lysine N-methyltransferase activity ATP-dependent DNA helicase activity myricetin 3'-O-methyltransferase activity nucleobase-containing compound metabolic process alkaloid biosynthetic process peptidyl-lysine monomethylation DNA duplex unwinding aromatic compound biosynthetic process tRNA methylation Transcription_related, Transcription regulator: SET MAPK signaling pathway - plant phosphoprotein phosphatase activity protein homodimerization activity | details |
| TreatCFM002134 | Cell cycle - Caulobacter UDP-D-galacturonate biosynthesis II (from D-galacturonate) serine-type endopeptidase activity phosphate acquisition Golgi medial cisterna cis-Golgi network response to reactive oxygen species microtubule organizing center organization microtubule nucleation regulation of vesicle targeting, to, from or within Golgi proteolysis spindle assembly cytokinesis by cell plate formation mitotic nuclear division regulation of gene expression peptidyl-tyrosine dephosphorylation intra-Golgi vesicle-mediated transport phosphotransferase activity, alcohol group as acceptor SNARE interactions in vesicular transport protein tyrosine phosphatase activity SNARE binding SNAP receptor activity vesicle fusion Amino sugar and nucleotide sugar metabolism ER to Golgi vesicle-mediated transport | details |
| TreatCFM002148 | Renin-angiotensin system S-methyl-5-thio-α-D-ribose 1-phosphate degradation L-leucine biosynthesis L-leucine degradation I peptide hormone binding peptide-methionine (S)-S-oxide reductase activity dipeptidyl-peptidase activity xylem and phloem pattern formation protein repair nitrate import Protein_kinases_phosphatases, PPC:1.12.4: Leucine Rich Repeat Kinase XI & XII Plant-pathogen interaction MAP kinase kinase kinase activity ADP binding activation of MAPKK activity serine-type carboxypeptidase activity MAPK cascade drug transmembrane transporter activity antiporter activity 2-alkenal reductase [NAD(P)] activity | details |
| TreatCFM002149 | Cell cycle - Caulobacter serine-type endopeptidase activity proteolysis response to reactive oxygen species Transcription_related, Transcription regulator: SET peptidyl-lysine monomethylation regulation of gene expression DNA recombination ATP-dependent helicase activity protein-lysine N-methyltransferase activity RNA degradation | details |
| TreatCFM002164 | methylated histone binding Cell cycle - Caulobacter MAPK signaling pathway peptidyl-lysine monomethylation response to reactive oxygen species regulation of gene expression protein-lysine N-methyltransferase activity Transcription_related, Transcription regulator: SET | details |
Expression profiles
 Show details about module gene expression profiling |