TreatCFM001517's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Plant-pathogen interaction | 0.001893994 | KEGG pathway |
| Cytochrome_P450, Cytochrome P450: CYP81K | 0.006498781 | CYP450 family |
| folate polyglutamylation II | 0.008027459 | plantCyc |
| glutamate removal from folates | 0.008027459 | plantCyc |
| UDP-D-galactose biosynthesis | 0.008027459 | plantCyc |
| UDP-L-arabinose biosynthesis I (from UDP-xylose) | 0.008027459 | plantCyc |
| peptide-methionine (S)-S-oxide reductase activity | 0.010722988 | GO:0008113 |
| gamma-glutamyl-peptidase activity | 0.010722988 | GO:0034722 |
| Cytochrome_P450, Cytochrome P450: CYP81D | 0.011357754 | CYP450 family |
| UDP-glucose 4-epimerase activity | 0.012505163 | GO:0003978 |
| D-galactose degradation III | 0.012835397 | plantCyc |
| Cell cycle - yeast | 0.013107918 | KEGG pathway |
| Folate biosynthesis | 0.013107918 | KEGG pathway |
| tetrahydrofolylpolyglutamate metabolic process | 0.013450699 | GO:0046900 |
| chromosome condensation | 0.013450699 | GO:0030261 |
| condensed chromosome | 0.015907199 | GO:0000793 |
| microtubule cytoskeleton | 0.015907199 | GO:0015630 |
| cytoskeletal part | 0.015907199 | GO:0044430 |
| UDP-sugars interconversion | 0.019232628 | plantCyc |
| stachyose degradation | 0.020137757 | plantCyc |
| Galactose metabolism | 0.020230546 | KEGG pathway |
| ADP binding | 0.021411784 | GO:0043531 |
| sesamin biosynthesis | 0.024799256 | plantCyc |
| protein repair | 0.026887091 | GO:0030091 |
| indole glucosinolate metabolic process | 0.030199754 | GO:0042343 |
| defense response to other organism | 0.030199754 | GO:0098542 |
| mitotic nuclear division | 0.030199754 | GO:0007067 |
| galactose metabolic process | 0.030199754 | GO:0006012 |
| glutamine metabolic process | 0.030199754 | GO:0006541 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T001708 | AT4G18750 (3.00E-107) | DOT4|DEFECTIVELY ORGANIZED TRIBUTARIES 4 |
| CRO_T001983 | AT4G25130 (9.00E-95) | MSRA4|methionine sulfoxide reductase A4; PMSR4|peptide met sulfoxide reductase 4 |
| CRO_T004325 | AT4G37320 (1.00E-115) | CYP81D5|cytochrome P450, family 81, subfamily D, polypeptide 5 |
| CRO_T006413 | AT1G03780 (6.00E-110) | TPX2|targeting protein for XKLP2 |
| CRO_T007663 | AT1G78660 (3.00E-29) | ATGGH1|gamma-glutamyl hydrolase 1 |
| CRO_T009808 | AT1G12780 (1.00E-166) | ATUGE1|A. THALIANA UDP-GLC 4-EPIMERASE 1; UGE1|UDP-D-glucose/UDP-D-galactose 4-epimerase 1 |
| CRO_T013667 | AT3G03400 (5.00E-20) | EF hand calcium-binding protein family |
| CRO_T017888 | AT3G07040 (2.00E-82) | RPM1|RESISTANCE TO P. SYRINGAE PV MACULICOLA 1; RPS3|RESISTANCE TO PSEUDOMONAS SYRINGAE 3 |
| CRO_T018132 | AT2G32590 (3.00E-176) | EMB2795|EMBRYO DEFECTIVE 2795 |
| CRO_T025684 | - | - |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM001035 | Peroxisome thioredoxin pathway sesamin biosynthesis Cytochrome_P450, Cytochrome P450: CYP81D Protein_kinases_phosphatases, PPC:1.3.2: Leucine Rich Repeat Receptor VIII cytoskeletal part microtubule cytoskeleton steroid metabolic process | details |
| TreatCFM001103 | adenine and adenosine salvage II Transcription_related, Transcription factor: OFP phospholipase activity adenine phosphoribosyltransferase activity acylglycerol lipase activity adenine salvage microtubule cytoskeleton cytoskeletal part nucleoside metabolic process lipid catabolic process FMN binding cytoplasm antiporter activity drug transmembrane transporter activity regulation of cellular process drug transmembrane transport | details |
| TreatCFM001188 | Cell cycle - yeast MAPK signaling pathway mitotic chromosome condensation adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc microtubule cytoskeleton cytoskeletal part protein disulfide isomerase activity cell regulation of cellular process cell redox homeostasis cell division polysaccharide binding | details |
| TreatCFM001518 | Cytochrome_P450, Cytochrome P450: CYP81K Transcription_related, Transcription factor: STAT UDP-D-galactose biosynthesis UDP-L-arabinose biosynthesis I (from UDP-xylose) Cytochrome_P450, Cytochrome P450: CYP81D D-galactose degradation III stachyose degradation UDP-sugars interconversion sesamin biosynthesis Galactose metabolism box C/D snoRNP complex indole glucosinolate metabolic process defense response to other organism rRNA modification galactose metabolic process Ribosome biogenesis in eukaryotes organic substance metabolic process cellular metabolic process UDP-glucose 4-epimerase activity signal transducer activity snoRNA binding secondary metabolite biosynthetic process signal transduction | details |
| TreatCFM001571 | rRNA modification box C/D snoRNP complex snoRNA binding Ribosome biogenesis in eukaryotes small-subunit processome UDP-D-galactose biosynthesis UDP-L-arabinose biosynthesis I (from UDP-xylose) D-galactose degradation III UDP-glucose 4-epimerase activity Galactose metabolism stachyose degradation UDP-sugars interconversion galactose metabolic process organic substance metabolic process cellular metabolic process transmembrane transporter activity Ubiquitin_Proteasome_system, E3 adaptor: F-box | details |
| TreatCFM001590 | long-chain fatty acid-CoA ligase activity condensed chromosome chromosome condensation long-chain fatty acid metabolic process mitotic nuclear division Cell cycle - yeast Fatty acid metabolism cutin biosynthesis fatty acid β-oxidation II (peroxisome) long-chain fatty acid activation oleate biosynthesis I (plants) palmitate biosynthesis II (bacteria and plants) phosphatidylcholine acyl editing sporopollenin precursors biosynthesis stearate biosynthesis II (bacteria and plants) suberin monomers biosynthesis | details |
| TreatCFM001659 | condensed chromosome chromosome condensation Protein_kinases_phosphatases, PPC:1.4.1: Crinkly 4 Like Kinase Protein_kinases_phosphatases, PPC:1.6.1: Leucine Rich Repeat Kinase IX Transcription_related, Transcription regulator: AUX/IAA Cell cycle - yeast adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 DNA replication DNA recombination protein phosphorylation mitotic nuclear division DNA repair drug transmembrane transport regulation of cellular process | details |
| TreatCFM001986 | L-alanine biosynthesis III molybdenum cofactor biosynthesis tRNA wobble position uridine thiolation chromosome condensation protein targeting to chloroplast Cell cycle - yeast Fanconi anemia pathway sulfurtransferase activity hydrolase activity, acting on acid anhydrides condensed chromosome mitotic nuclear division zinc II ion transmembrane transport | details |
| TreatCFM002010 | Transcription_related, Transcription factor: ERF | details |
| TreatCFM002032 | sucrose metabolic process formation of glycosidic bonds, GlycosylTransferases: GTnc glutamine N-phenylacetyltransferase activity glycogen (starch) synthase activity starch binding sucrose-phosphate synthase activity sucrose synthase activity starch biosynthesis sucrose biosynthesis I (from photosynthesis) sucrose biosynthesis II Plant-pathogen interaction Starch and sucrose metabolism | details |
| TreatCFM002080 | chromosome condensation condensed chromosome mitotic nuclear division Cell cycle - yeast Fanconi anemia pathway Transcription_related, Transcription factor: HB cytoplasmic part | details |
| TreatCFM002081 | Ubiquitin_Proteasome_system, E3 adaptor: F-box | details |
| TreatCFM002122 | proteolysis serine-type endopeptidase activity gamma-glutamyl-peptidase activity folate polyglutamylation II glutamate removal from folates glutathione peroxidase activity tetrahydrofolylpolyglutamate metabolic process protein-lysine N-methyltransferase activity glutathione-peroxide redox reactions reactive oxygen species degradation Arachidonic acid metabolism Cell cycle - Caulobacter Folate biosynthesis response to reactive oxygen species Transcription_related, Transcription regulator: PHD Transcription_related, Transcription regulator: SET peptidyl-lysine monomethylation glutamine metabolic process regulation of gene expression | details |
| TreatCFM002129 | cell cell redox homeostasis microtubule cytoskeleton cytoskeletal part thioredoxin pathway MAPK signaling pathway Stilbenoid, diarylheptanoid and gingerol biosynthesis vindoline and vinblastine biosynthesis 11-O-demethyl-17-O-deacetylvindoline O-methyltransferase activity protein disulfide isomerase activity myricetin 3'-O-methyltransferase activity aromatic compound biosynthetic process alkaloid biosynthetic process regulation of cellular process protein disulfide oxidoreductase activity protein homodimerization activity electron carrier activity | details |
| TreatCFM002148 | Renin-angiotensin system S-methyl-5-thio-α-D-ribose 1-phosphate degradation L-leucine biosynthesis L-leucine degradation I peptide hormone binding peptide-methionine (S)-S-oxide reductase activity dipeptidyl-peptidase activity xylem and phloem pattern formation protein repair nitrate import Protein_kinases_phosphatases, PPC:1.12.4: Leucine Rich Repeat Kinase XI & XII Plant-pathogen interaction MAP kinase kinase kinase activity ADP binding activation of MAPKK activity serine-type carboxypeptidase activity MAPK cascade drug transmembrane transporter activity antiporter activity 2-alkenal reductase [NAD(P)] activity | details |
| TreatCFM002154 | Cell cycle - Caulobacter serine-type endopeptidase activity ADP binding protein-lysine N-methyltransferase activity proteolysis response to reactive oxygen species Transcription_related, Transcription regulator: SET peptidyl-lysine monomethylation regulation of gene expression Plant-pathogen interaction defense response | details |
Expression profiles
 Show details about module gene expression profiling |