TreatCFM002160's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| phosphoribosylanthranilate isomerase activity | 0.002924883 | GO:0004640 |
| sucrose-phosphate synthase activity | 0.002924883 | GO:0046524 |
| nectar secretion | 0.002954428 | GO:0071836 |
| sucrose biosynthetic process | 0.002954428 | GO:0005986 |
| protein targeting to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway | 0.002954428 | GO:0043328 |
| sucrose synthase activity | 0.003898116 | GO:0016157 |
| tryptophan biosynthetic process | 0.005535869 | GO:0000162 |
| ESCRT II complex | 0.005909729 | GO:0000814 |
| L-tryptophan biosynthesis | 0.012121184 | plantCyc |
| reactive oxygen species degradation | 0.012121184 | plantCyc |
| sucrose biosynthesis I (from photosynthesis) | 0.012121184 | plantCyc |
| sucrose biosynthesis II | 0.012121184 | plantCyc |
| superoxide radicals degradation | 0.012121184 | plantCyc |
| Biosynthesis of amino acids | 0.042500872 | KEGG pathway |
| Endocytosis | 0.042500872 | KEGG pathway |
| Starch and sucrose metabolism | 0.042500872 | KEGG pathway |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T001341 | AT5G10060 (8.00E-108) | ENTH/VHS family protein |
| CRO_T009916 | AT4G27040 (2.00E-126) | VPS22|EAP30/Vps36 family protein |
| CRO_T023099 | AT1G48090 (0) | calcium-dependent lipid-binding family protein |
| CRO_T024317 | AT1G22930 (0) | T-complex protein 11 |
| CRO_T025529 | AT1G04920 (0) | ATSPS3F|sucrose phosphate synthase 3F |
| CRO_T025582 | AT1G07780 (3.00E-50) | PAI1|phosphoribosylanthranilate isomerase 1; TRP6|TRANSIENT RECEPTOR POTENTIAL 6 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM001100 | pyrimidine ribonucleosides salvage I amyloplast organization protein targeting to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway negative gravitropism 1,3-β-D-glucan biosynthesis detoxification of reactive carbonyls in chloroplasts ESCRT II complex formation of translation preinitiation complex regulation of translational initiation eukaryotic 43S preinitiation complex eukaryotic 48S preinitiation complex membrane part eukaryotic translation initiation factor 3 complex plant-type vacuole membrane | details |
| TreatCFM001256 | NURF complex regulation of ARF protein signal transduction ATP-dependent chromatin remodeling Transcription_related, Transcription regulator: SNF2 nucleosome binding ARF guanyl-nucleotide exchange factor activity Endocytosis positive regulation of GTPase activity vesicle-mediated transport helicase activity ATPase activity | details |
| TreatCFM001530 | mevalonate pathway I purine nucleotide metabolic process adenosine ribonucleotides de novo biosynthesis nucleoside triphosphate adenylate kinase activity acetyl-CoA C-acetyltransferase activity adenylate kinase activity Transcription_related, Transcription factor: GRAS single organism reproductive process reproductive structure development nucleotide phosphorylation post-embryonic development | details |
| TreatCFM001551 | cytosol regulation of calcium or calmodulin-mediated signal transduction in response to host detection of calcium ion sucrose biosynthetic process modulation by symbiont of host calcium or calmodulin-mediated signal transduction nectar secretion mitochondrial respiratory chain complex assembly protein processing involved in protein targeting to mitochondrion regulation of photomorphogenesis calcium-mediated signaling sucrose biosynthesis I (from photosynthesis) sucrose biosynthesis II mitochondrial inner membrane peptidase complex signal peptide processing Ras signaling pathway formation of translation preinitiation complex regulation of translational initiation eukaryotic 48S preinitiation complex eukaryotic 43S preinitiation complex eukaryotic translation initiation factor 3 complex sucrose-phosphate synthase activity sucrose synthase activity ribosome binding Starch and sucrose metabolism translation initiation factor activity protein binding 2-alkenal reductase [NAD(P)] activity | details |
| TreatCFM002118 | organic acid transmembrane transporter activity molybdate ion transmembrane transporter activity molybdate ion transport organic acid transmembrane transport transcription coactivator activity transcription from RNA polymerase II promoter positive regulation of transcription, DNA-templated | details |
| TreatCFM002163 | Estrogen signaling pathway L-tryptophan biosynthesis sphingolipid biosynthesis (plants) Sphingolipid metabolism phosphoribosylanthranilate isomerase activity regulation of programmed cell death chaperone-mediated protein folding tryptophan biosynthetic process cell growth protein peptidyl-prolyl isomerization biosynthetic process FK506 binding metalloendopeptidase activity peptidyl-prolyl cis-trans isomerase activity Biosynthesis of amino acids | details |
Expression profiles
 Show details about module gene expression profiling |