PH01001196G0070's details annotation
1.Annotation
ICBR annotation: autophagy protein 9, putative, expressed
Blast result AT2G31260 : 0.00E+00
Blast annotation: autophagy 9 (APG9)
2.Location
Scaffold: PH01001196
Strand: -
| Region | Start | End |
| gene | 40849 | 46304 |
| mRNA | 40849 | 46304 |
| exon | 40849 | 42142 |
| exon | 43321 | 43391 |
| exon | 43478 | 43555 |
| exon | 43925 | 44131 |
| exon | 44227 | 44406 |
| exon | 44605 | 44827 |
| exon | 45349 | 45669 |
| exon | 45767 | 46304 |
| CDS | 41098 | 42142 |
| CDS | 43321 | 43391 |
| CDS | 43478 | 43555 |
| CDS | 43925 | 44131 |
| CDS | 44227 | 44406 |
| CDS | 44605 | 44827 |
| CDS | 45349 | 45669 |
| CDS | 45767 | 46275 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001378 | IMP biosynthetic process, purine ribonucleoside monophosphate biosynthetic process, thiolester_hydrolase_activity AMP deaminase activity, deaminase activity, regulation of ARF GTPase activity, ARF GTPase activator activity, Fatty_acid_biosynthesis Purine_metabolism fatty acid biosynthetic process, zinc ion binding, |
| coexpression network | CFinderM001389 | outer membrane-bounded periplasmic space, MYB_related Transcription_Regulator(from PlantTFDB) MYB-related Transcription_Regulator(from iTAK) Protein_processing_in_endoplasmic_reticulum |
| coexpression network | CFinderM001436 | STE_STE20-Fray (from iTAK) CAMTA Transcription_Regulator(from PlantTFDB) Ubiquitin_mediated_proteolysis |
| coexpression network | CFinderM001457 | mRNA_surveillance_pathway Diterpenoid_biosynthesis CAMTA Transcription_Regulator(from PlantTFDB) protein binding, mechanically-gated_ion_channel_activity |
| coexpression network | CFinderM001458 | mRNA_surveillance_pathway AGC_RSK-2 (from iTAK) SBP Transcription_Regulator(from PlantTFDB) cell death, |
| coexpression network | CFinderM001499 | Glutathione_metabolism metallopeptidase activity, ionotropic glutamate receptor activity, extracellular-glutamate-gated ion channel activity, outer membrane-bounded periplasmic space, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04109.15 | APG9 | 177 | 531 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.