|
1.Module annotation (GSEA enrichment result) | Function Annotation | FDR | Gene Ontolog | | STE_STE20-Fray (from iTAK) | 0.009603221 | GFam | | CAMTA Transcription_Regulator(from PlantTFDB) | 0.009603221 | GFam | | Ubiquitin_mediated_proteolysis | 0.029054412 | KEGG |
2.Module member annotation | Gene ID | Annotation | Arabidopsis ortholog (Blast e-value) | | PH01000428G0370 | DNA-binding protein with MIZ/SP-RING zinc finger, PHD-finger and SAP domain | AT5G60410 (0.00E+00) | | PH01000502G0010 | Tetratricopeptide repeat (TPR)-like superfamily protein | AT2G27610 (8.30E-50) | | PH01000727G0100 | autophagy 2 | AT3G19190 (4.60E-42) | | PH01000879G0230 | Protein kinase superfamily protein | AT5G14720 (0.00E+00) | | PH01000938G0190 | Telomerase activating protein Est1 | AT5G19400 (7.00E-156) | | PH01001178G0490 | plant U-box 49 | AT5G67530 (0.00E+00) | | PH01001196G0070 | autophagy 9 (APG9) | AT2G31260 (0.00E+00) | | PH01001502G0450 | ABC transporter of the mitochondrion 3 | AT5G58270 (0.00E+00) | | PH01002143G0030 | calmodulin binding;transcription regulators | AT4G16150 (0.00E+00) | | PH01002178G0190 | fatty acyl-ACP thioesterases B | AT1G08510 (7.00E-136) | | PH01002248G0180 | methyl-CPG-binding domain 4 | AT3G63030 (1.10E-36) | | PH01002722G0090 | 2-oxoacid dehydrogenases acyltransferase family protein | AT3G25860 (2.20E-97) | | PH01002801G0100 | DNA-binding protein with MIZ/SP-RING zinc finger, PHD-finger and SAP domain | AT5G60410 (9.00E-123) | | PH01004030G0100 | initiator tRNA phosphoribosyl transferase family protein | AT2G40570 (1.00E-162) |
3.Direct connection functional modules | Module ID | Function Annotation | Overlap condition | | CFinderM000290 | autophagy,
Valine,_leucine_and_isoleucine_degradation
Endocytosis
| details | | CFinderM000442 | GATA Transcription_Regulator(from PlantTFDB)
C2C2-GATA Transcription_Regulator(from iTAK)
RLK-Pelle_LRR-VII-1 (from iTAK)
positive_regulation_of_transcription,_DNA-templated
| details | | CFinderM000688 | GT64 GlycosylTransferases
Alanine,_aspartate_and_glutamate_metabolism
intrinsic to endoplasmic reticulum membrane,
Nicotinate_and_nicotinamide_metabolism
Terpenoid_backbone_biosynthesis
regulation of ARF GTPase activity,
isoprenoid biosynthetic process,
| details | | CFinderM000732 | SNF2 Transcription_Regulator(from iTAK)
transferase activity, transferring pentosyl groups,
mRNA_surveillance_pathway
| details | | CFinderM000810 | CAMTA Transcription_Regulator(from PlantTFDB)
glycerol-3-phosphate dehydrogenase complex,
Valine,_leucine_and_isoleucine_degradation
| details | | CFinderM000882 | GH35 Glycoside_Hydrolases
transferase activity, transferring pentosyl groups,
| details | | CFinderM000977 | mRNA_surveillance_pathway
CAMTA Transcription_Regulator(from PlantTFDB)
Ubiquitin_mediated_proteolysis
defense response,
| details | | CFinderM001010 | RLK-Pelle_PERK-2 (from iTAK)
ethylene mediated signaling pathway,
endoplasmic reticulum membrane,
Plant_hormone_signal_transduction
protein histidine kinase activity,
Others Transcription_Regulator(from iTAK)
two-component sensor activity,
protein tyrosine kinase activity,
two-component signal transduction system (phosphorelay),
EIL Transcription_Regulator(from PlantTFDB)
two-component response regulator activity,
signal transducer activity,
sulfate assimilation,
| details | | CFinderM001304 | nucleoside-triphosphatase activity,
ATPase activity, coupled to transmembrane movement of substances,
GT47 GlycosylTransferases
RLK-Pelle_CR4L (from iTAK)
ABC_transporters
ATPase activity,
ATP binding,
nucleotide binding,
SNF2 Transcription_Regulator(from iTAK)
| details | | CFinderM001378 | IMP biosynthetic process,
purine ribonucleoside monophosphate biosynthetic process,
thiolester_hydrolase_activity
AMP deaminase activity,
deaminase activity,
regulation of ARF GTPase activity,
ARF GTPase activator activity,
Fatty_acid_biosynthesis
Purine_metabolism
fatty acid biosynthetic process,
zinc ion binding,
| details | | CFinderM001389 | outer membrane-bounded periplasmic space,
MYB_related Transcription_Regulator(from PlantTFDB)
MYB-related Transcription_Regulator(from iTAK)
Protein_processing_in_endoplasmic_reticulum
| details | | CFinderM001432 | RLK-Pelle_CR4L (from iTAK)
ubiquitin ligase complex,
Ubiquitin_mediated_proteolysis
regulation of ARF GTPase activity,
| details | | CFinderM001457 | mRNA_surveillance_pathway
Diterpenoid_biosynthesis
CAMTA Transcription_Regulator(from PlantTFDB)
protein binding,
mechanically-gated_ion_channel_activity
| details | | CFinderM001458 | mRNA_surveillance_pathway
AGC_RSK-2 (from iTAK)
SBP Transcription_Regulator(from PlantTFDB)
cell death,
| details | | CFinderM001499 | Glutathione_metabolism
metallopeptidase activity,
ionotropic glutamate receptor activity,
extracellular-glutamate-gated ion channel activity,
outer membrane-bounded periplasmic space,
| details | | CFinderM001574 | SBP Transcription_Regulator(from PlantTFDB)
mRNA_surveillance_pathway
bZIP Transcription_Regulator(from PlantTFDB)
| details | | CFinderM001611 | CAMTA Transcription_Regulator(from PlantTFDB)
ABC_transporters
Phosphatidylinositol_signaling_system
Inositol_phosphate_metabolism
Phagosome
| details | | CFinderM001628 | GH19 Glycoside_Hydrolases
transferase activity, transferring pentosyl groups,
chitinase activity,
ER to Golgi vesicle-mediated transport,
chitin catabolic process,
cell wall macromolecule catabolic process,
| details | | CFinderM001729 | mRNA_surveillance_pathway
CAMTA Transcription_Regulator(from PlantTFDB)
protein binding,
transferase activity, transferring acyl groups,
| details | | CFinderM001785 | transferase activity, transferring pentosyl groups,
Nicotinate_and_nicotinamide_metabolism
Diterpenoid_biosynthesis
| details | | CFinderM001826 | regulation of ARF GTPase activity,
| details | | CFinderM001870 | Basal_transcription_factors
SNF2 Transcription_Regulator(from iTAK)
transferase activity, transferring pentosyl groups,
| details |
4.Expression profilings |
