PH01001412G0460's details annotation
1.Annotation
ICBR annotation: riboflavin biosynthesis protein ribAB, chloroplast precursor, putative, expressed
Blast result AT5G64300 : 0.00E+00
Blast annotation: GTP cyclohydrolase II
2.Location
Scaffold: PH01001412
Strand: -
| Region | Start | End |
| gene | 286659 | 290574 |
| mRNA | 286659 | 290574 |
| exon | 286659 | 286974 |
| exon | 287121 | 287417 |
| exon | 287834 | 287963 |
| exon | 288330 | 288655 |
| exon | 289012 | 289233 |
| exon | 289330 | 289711 |
| exon | 290240 | 290574 |
| CDS | 286690 | 286974 |
| CDS | 287121 | 287417 |
| CDS | 287834 | 287963 |
| CDS | 288330 | 288655 |
| CDS | 289012 | 289233 |
| CDS | 289330 | 289711 |
| CDS | 290240 | 290262 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001312 | metalloendopeptidase activity, Riboflavin_metabolism 6-phosphofructokinase complex, GTP cyclohydrolase II activity, catalytic activity, 3,4-dihydroxy-2-butanone-4-phosphate synthase activity, proteolysis, riboflavin biosynthetic process, metallopeptidase activity, 6-phosphofructokinase activity, glycolysis, |
| coexpression network | CFinderM001491 | 3,4-dihydroxy-2-butanone-4-phosphate synthase activity, glucose-6-phosphate isomerase activity, sterol_24-C-methyltransferase_activity GTP cyclohydrolase II activity, riboflavin biosynthetic process, steroid biosynthetic process, gluconeogenesis, isoprenoid biosynthetic process, |
| coexpression network | CFinderM001867 | Pseudo ARR-B Transcription_Regulator(from iTAK) Riboflavin_metabolism GTP cyclohydrolase II activity, 3,4-dihydroxy-2-butanone-4-phosphate synthase activity, mRNA_surveillance_pathway riboflavin biosynthetic process, protein catabolic process, two-component signal transduction system (phosphorelay), |
| coexpression network | CFinderM001872 | 3,4-dihydroxy-2-butanone-4-phosphate synthase activity, GTP cyclohydrolase II activity, Riboflavin_metabolism riboflavin biosynthetic process, isoprenoid biosynthetic process, nucleic acid binding, Terpenoid_backbone_biosynthesis |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00926.18 | DHBP_synthase | 132 | 325 |
| PF00925.19 | GTP_cyclohydro2 | 339 | 501 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Riboflavin metabolism | 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II | ko00740 | K14652 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003935 | GTP cyclohydrolase II activity |
| GO:0008686 | 3,4-dihydroxy-2-butanone-4-phosphate synthase activity |
| GO:0009231 | riboflavin biosynthetic process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.