|
1.Module annotation (GSEA enrichment result) | Function Annotation | FDR | Gene Ontolog | | Pseudo ARR-B Transcription_Regulator(from iTAK) | 0.001124807 | GFam | | Riboflavin_metabolism | 0.007307244 | KEGG | | GTP cyclohydrolase II activity, | 0.016704415 | GO:0003935 | | 3,4-dihydroxy-2-butanone-4-phosphate synthase activity, | 0.016704415 | GO:0008686 | | mRNA_surveillance_pathway | 0.032892728 | KEGG | | riboflavin biosynthetic process, | 0.036353106 | GO:0009231 | | protein catabolic process, | 0.038434422 | GO:0030163 | | two-component signal transduction system (phosphorelay), | 0.041210521 | GO:0000160 |
2.Module member annotation | Gene ID | Annotation | Arabidopsis ortholog (Blast e-value) | | PH01000410G0960 | hydroxyproline-rich glycoprotein family protein | AT2G25930 (1.10E-63) | | PH01001028G0610 | FTSH protease 4 | AT2G26140 (0.00E+00) | | PH01001350G0210 | PCF11P-similar protein 4 | AT4G04885 (1.40E-73) | | PH01001412G0460 | GTP cyclohydrolase II | AT5G64300 (0.00E+00) | | PH01003618G0130 | CCT motif -containing response regulator protein | AT5G61380 (1.10E-91) | | PH01005943G0040 | global transcription factor group E4 | AT1G06230 (9.20E-83) |
3.Direct connection functional modules | Module ID | Function Annotation | Overlap condition | | CFinderM000701 | nucleotide kinase activity,
adenylate kinase activity,
phosphotransferase activity, phosphate group as acceptor,
nucleobase-containing compound kinase activity,
| details | | CFinderM001082 | IWS1 Transcription_Regulator(from iTAK)
protein catabolic process,
| details | | CFinderM001083 | MYB-related Transcription_Regulator(from iTAK)
MYB_related Transcription_Regulator(from PlantTFDB)
Pseudo ARR-B Transcription_Regulator(from iTAK)
protein import into mitochondrial inner membrane,
transcription, DNA-dependent,
nucleus,
IWS1 Transcription_Regulator(from iTAK)
GNAT Transcription_Regulator(from iTAK)
| details | | CFinderM001312 | metalloendopeptidase activity,
Riboflavin_metabolism
6-phosphofructokinase complex,
GTP cyclohydrolase II activity,
catalytic activity,
3,4-dihydroxy-2-butanone-4-phosphate synthase activity,
proteolysis,
riboflavin biosynthetic process,
metallopeptidase activity,
6-phosphofructokinase activity,
glycolysis,
| details | | CFinderM001405 | transcription factor TFIIF complex,
transcription initiation from RNA polymerase II promoter,
Basal_transcription_factors
Endocytosis
Oxidative_phosphorylation
protein catabolic process,
| details | | CFinderM001455 | Amino_sugar_and_nucleotide_sugar_metabolism
CAMK_CDPK (from iTAK)
carbohydrate phosphorylation,
mitochondrial electron transport, ubiquinol to cytochrome c,
galactose metabolic process,
ubiquinol-cytochrome-c reductase activity,
galactokinase activity,
| details | | CFinderM001491 | 3,4-dihydroxy-2-butanone-4-phosphate synthase activity,
glucose-6-phosphate isomerase activity,
sterol_24-C-methyltransferase_activity
GTP cyclohydrolase II activity,
riboflavin biosynthetic process,
steroid biosynthetic process,
gluconeogenesis,
isoprenoid biosynthetic process,
| details | | CFinderM001494 | GRAS Transcription_Regulator(from PlantTFDB)
protein catabolic process,
| details | | CFinderM001550 | mitochondrial proton-transporting ATP synthase complex, coupling factor F(o),
oxidoreductase activity,
hydrogen ion transmembrane transporter activity,
ATP synthesis coupled proton transport,
| details | | CFinderM001618 | transcription factor TFIIF complex,
transcription initiation from RNA polymerase II promoter,
Basal_transcription_factors
Endocytosis
protein catabolic process,
| details | | CFinderM001671 | Phagosome
proton-transporting V-type ATPase, V1 domain,
mitochondrial proton-transporting ATP synthase complex, coupling factor F(o),
ion_transmembrane_transport
hydrogen ion transmembrane transporter activity,
proton-transporting ATPase activity, rotational mechanism,
| details | | CFinderM001721 | STE_STE11 (from iTAK)
outer membrane,
Endocytosis
| details | | CFinderM001788 | protein folding,
protein catabolic process,
| details | | CFinderM001816 | transcription factor TFIIF complex,
Basal_transcription_factors
transcription initiation from RNA polymerase II promoter,
protein catabolic process,
| details | | CFinderM001840 | transcription factor TFIIF complex,
STE_STE11 (from iTAK)
diphosphomevalonate decarboxylase activity,
ATP binding,
histone deacetylase activity,
histone deacetylation,
transcription initiation from RNA polymerase II promoter,
Basal_transcription_factors
Terpenoid_backbone_biosynthesis
protein catabolic process,
isoprenoid biosynthetic process,
Endocytosis
| details | | CFinderM001866 | sterol metabolic process,
Steroid_biosynthesis
cholestenol delta-isomerase activity,
protein catabolic process,
MYB_related Transcription_Regulator(from PlantTFDB)
C3H Transcription_Regulator(from PlantTFDB)
MYB-related Transcription_Regulator(from iTAK)
| details | | CFinderM001872 | 3,4-dihydroxy-2-butanone-4-phosphate synthase activity,
GTP cyclohydrolase II activity,
Riboflavin_metabolism
riboflavin biosynthetic process,
isoprenoid biosynthetic process,
nucleic acid binding,
Terpenoid_backbone_biosynthesis
| details |
4.Expression profilings |
