CFinderM000234's details annotation
1.Tissue preferential analysis
root  culm  leaf  shoot  sheath  rhizome  bud  panicle  
     
2.Stress differential analysis
     
     
Protein:Yellow color--query protein     Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein     Blue--proteins own interaction and negative co-expression relationship with target protein     Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

1.Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog
single-stranded DNA binding,9.74E-05GO:0003697
LUG Transcription_Regulator(from iTAK)0.001686814GFam
G-protein coupled receptor activity,0.010191008GO:0004930
nucleotide-excision repair,0.010299453GO:0006289
G-protein coupled receptor signaling pathway,0.010299453GO:0007186
Nucleotide_excision_repair0.01212936KEGG
nuclease activity,0.02035814GO:0004518
endonuclease activity,0.02035814GO:0004519
DNA repair,0.036147724GO:0006281

2.Module member annotation

Gene IDAnnotationArabidopsis ortholog (Blast e-value)
PH01000038G1730dentin sialophosphoprotein-relatedAT3G21290 (2.50E-79)
PH01000379G0110glutamate receptor 2.2AT2G24720 (4.00E-124)
PH01000408G04605-3 exonuclease family proteinAT3G28030 (0.00E+00)
PH01001327G0480-- (-)
PH01002317G0220LEUNIG_homologAT2G32700 (8.60E-70)
PH01004060G0120G2484-1 proteinAT4G17330 (5.00E-165)

3.Direct connection functional modules

Module IDFunction AnnotationOverlap condition
CFinderM000641nucleotide-excision repair,
Nucleotide_excision_repair
single-stranded DNA binding,
protein binding,
nuclease activity,
endonuclease activity,
DNA repair,
details
CFinderM000725Proteasome
ATP synthesis coupled proton transport,
protein catabolic process,
details
CFinderM000753GH27 Glycoside_Hydrolases
Glycosphingolipid_biosynthesis_-_globo_series
Sphingolipid_metabolism
Glycerolipid_metabolism
Galactose_metabolism
details
CFinderM000970Protein_processing_in_endoplasmic_reticulum
C3H Transcription_Regulator(from PlantTFDB)
RNA_transport
details
CFinderM000971C3H Transcription_Regulator(from PlantTFDB)
regulation_of_cyclin-dependent_protein_serine/threonine_kinase_activity
RNA_transport
details
CFinderM001291ubiquitin-dependent protein catabolic process,
details
CFinderM001322ubiquitin ligase complex,
protein ubiquitination,
DNA_replication
protein binding,
details
CFinderM001445Nucleotide_excision_repair
nucleotide-excision repair,
endonuclease activity,
nuclease activity,
single-stranded DNA binding,
protein binding,
DNA repair,
protein ubiquitination,
details
CFinderM001602SWI/SNF-BAF60b Transcription_Regulator(from iTAK)
histone modification,
C3H Transcription_Regulator(from PlantTFDB)
mRNA_surveillance_pathway
transcription initiation, DNA-dependent,
details
CFinderM001741protein folding,
Nucleotide_excision_repair
mRNA_surveillance_pathway
Ubiquitin_mediated_proteolysis
peptidyl-prolyl cis-trans isomerase activity,
nucleic acid binding,
details

4.Expression profilings