|
1.Module annotation (GSEA enrichment result) | Function Annotation | FDR | Gene Ontolog |
2.Module member annotation | Gene ID | Annotation | Arabidopsis ortholog (Blast e-value) | | PH01000367G0710 | Major facilitator superfamily protein | AT5G61520 (7.00E-141) | | PH01000537G0750 | Regulator of Vps4 activity in the MVB pathway protein | AT1G13340 (1.90E-30) | | PH01000791G0370 | TPX2 (targeting protein for Xklp2) protein family | AT4G32330 (6.10E-57) | | PH01000801G0630 | Zinc finger (C3HC4-type RING finger) family protein | AT5G60710 (8.00E-180) | | PH01002390G0020 | Protein kinase superfamily protein | AT4G31390 (0.00E+00) | | PH01006208G0040 | Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein | AT4G34960 (1.50E-85) |
3.Direct connection functional modules | Module ID | Function Annotation | Overlap condition | | CFinderM000016 | protein phosphorylation,
protein kinase activity,
transferase activity, transferring phosphorus-containing groups,
protein serine/threonine kinase activity,
ATP binding,
RLK-Pelle_LRR-XII-1 (from iTAK)
RLK-Pelle_DLSV (from iTAK)
RLK-Pelle_WAK (from iTAK)
ADP_binding
polysaccharide_binding
transmembrane_transporter_activity
WRKY Transcription_Regulator(from PlantTFDB)
recognition of pollen,
transmembrane transport,
defense response,
RLK-Pelle_L-LEC (from iTAK)
membrane,
integral to membrane,
RLK-Pelle_SD-2b (from iTAK)
RLK-Pelle_WAK_LRK10L-1 (from iTAK)
ATPase activity,
substrate-specific transmembrane transporter activity,
RLK-Pelle_LRR-XI-1 (from iTAK)
6-phosphofructokinase complex,
| details | | CFinderM000084 | cell wall macromolecule catabolic process,
chitin catabolic process,
WRKY Transcription_Regulator(from PlantTFDB)
defense response to fungus,
ammonium_transport
ammonium_transmembrane_transport
defense response to bacterium,
metabolic process,
chitinase activity,
| details | | CFinderM000192 | protein serine/threonine kinase activity,
protein kinase activity,
exonuclease activity,
protein phosphorylation,
transferase activity, transferring phosphorus-containing groups,
ATP binding,
polysaccharide_binding
RLK-Pelle_SD-2b (from iTAK)
RLK-Pelle_WAK (from iTAK)
ubiquitin ligase complex,
RLK-Pelle_LRR-Xb-2 (from iTAK)
| details | | CFinderM000194 | Group-Pl-3 (from iTAK)
regulation of Rab GTPase activity,
| details | | CFinderM000561 | GT4 GlycosylTransferases
NADP_biosynthetic_process
phosphorylation,
NAD+ kinase activity,
peptidyl-prolyl cis-trans isomerase activity,
| details | | CFinderM000562 | GT4 GlycosylTransferases
biosynthetic process,
| details | | CFinderM000576 | RNA_degradation
| details | | CFinderM000649 | B3 Transcription_Regulator(from PlantTFDB)
| details | | CFinderM000695 | STE_STE11 (from iTAK)
RLK-Pelle_RLCK-VIIa-1 (from iTAK)
SNARE_interactions_in_vesicular_transport
| details | | CFinderM000768 | peptidyl-prolyl cis-trans isomerase activity,
| details | | CFinderM000773 | GT4 GlycosylTransferases
phosphorylation,
magnesium_ion_transport
peptidyl-prolyl cis-trans isomerase activity,
magnesium_ion_transmembrane_transporter_activity
| details | | CFinderM000907 | SNARE_interactions_in_vesicular_transport
| details | | CFinderM000969 | Sulfur_relay_system
Cysteine_and_methionine_metabolism
Phosphatidylinositol_signaling_system
Glycerophospholipid_metabolism
cysteine-type endopeptidase activity,
| details | | CFinderM001045 | membrane,
1,3-beta-D-glucan synthase complex,
Glutathione_metabolism
MYB_related Transcription_Regulator(from PlantTFDB)
Ascorbate_and_aldarate_metabolism
MYB-related Transcription_Regulator(from iTAK)
| details | | CFinderM001128 | Galactose_metabolism
Porphyrin_and_chlorophyll_metabolism
| details | | CFinderM001274 | mitochondrial ribosome,
protein folding,
SNARE_interactions_in_vesicular_transport
PHD Transcription_Regulator(from iTAK)
| details | | CFinderM001275 | HB-other Transcription_Regulator(from PlantTFDB)
mRNA_surveillance_pathway
| details | | CFinderM001288 | HB-KNOX Transcription_Regulator(from iTAK)
TALE Transcription_Regulator(from PlantTFDB)
MYB_related Transcription_Regulator(from PlantTFDB)
MYB-related Transcription_Regulator(from iTAK)
Amino_sugar_and_nucleotide_sugar_metabolism
Glutathione_metabolism
SNARE_interactions_in_vesicular_transport
Ascorbate_and_aldarate_metabolism
| details | | CFinderM001303 | 1,3-beta-D-glucan synthase complex,
Methane_metabolism
(1->3)-beta-D-glucan biosynthetic process,
drug transmembrane transport,
membrane,
antiporter activity,
drug transmembrane transporter activity,
1,3-beta-D-glucan synthase activity,
| details | | CFinderM001397 | GT4 GlycosylTransferases
| details | | CFinderM001535 | TAZ Transcription_Regulator(from iTAK)
transcription cofactor activity,
histone acetyltransferase activity,
Oxidative_phosphorylation
peptidyl-prolyl cis-trans isomerase activity,
| details | | CFinderM001560 | HB-KNOX Transcription_Regulator(from iTAK)
GT48 GlycosylTransferases
| details | | CFinderM001561 | GT48 GlycosylTransferases
HB-KNOX Transcription_Regulator(from iTAK)
TKL-Pl-6 (from iTAK)
TALE Transcription_Regulator(from PlantTFDB)
1,3-beta-D-glucan synthase complex,
| details | | CFinderM001631 | Pseudo ARR-B Transcription_Regulator(from iTAK)
transaminase activity,
transferase activity, transferring alkyl or aryl (other than methyl) groups,
inorganic diphosphatase activity,
hydrogen-translocating pyrophosphatase activity,
peptidyl-prolyl cis-trans isomerase activity,
two-component response regulator activity,
| details | | CFinderM001687 | | details | | CFinderM001788 | protein folding,
protein catabolic process,
| details |
4.Expression profilings |
