|
1.Module annotation (GSEA enrichment result) | Function Annotation | FDR | Gene Ontolog | | IWS1 Transcription_Regulator(from iTAK) | 0.002997141 | GFam | | protein neddylation, | 0.003093943 | GO:0045116 | | cellular protein modification process, | 0.020054139 | GO:0006464 | | Ubiquitin_mediated_proteolysis | 0.025238006 | KEGG | | transcription, DNA-dependent, | 0.031407822 | GO:0006351 | | small protein activating enzyme activity, | 0.033053811 | GO:0008641 |
2.Module member annotation | Gene ID | Annotation | Arabidopsis ortholog (Blast e-value) | | PH01000068G0150 | Transcription elongation factor (TFIIS) family protein | AT5G05140 (1.10E-44) | | PH01000078G1660 | Protein of unknown function (DUF 3339) | AT5G08391 (1.20E-21) | | PH01000209G0280 | E1 C-terminal related 1 | AT5G19180 (4.00E-176) | | PH01001227G0490 | Low temperature and salt responsive protein family | AT4G28088 (4.40E-18) | | PH01001450G0370 | pentatricopeptide (PPR) domain protein 40 | AT3G16890 (3.00E-154) | | PH01001621G0250 | alpha/beta-Hydrolases superfamily protein | AT2G36290 (2.00E-85) |
3.Direct connection functional modules | Module ID | Function Annotation | Overlap condition | | CFinderM000051 | Stilbenoid,_diarylheptanoid_and_gingerol_biosynthesis
protein neddylation,
steroid biosynthetic process,
Flavonoid_biosynthesis
cellular protein modification process,
transferase activity, transferring acyl groups other than amino-acyl groups,
small protein activating enzyme activity,
3-beta-hydroxy-delta5-steroid dehydrogenase activity,
| details | | CFinderM000052 | protein neddylation,
cellular protein modification process,
Ubiquitin_mediated_proteolysis
small protein activating enzyme activity,
calcium-dependent phospholipid binding,
| details | | CFinderM000209 | proton-transporting ATP synthase complex, coupling factor F(o),
proton-transporting two-sector ATPase complex, proton-transporting domain,
protein neddylation,
Trihelix Transcription_Regulator(from PlantTFDB)
cellular protein modification process,
ATP hydrolysis coupled proton transport,
ATP synthesis coupled proton transport,
apoplast,
Ubiquitin_mediated_proteolysis
small protein activating enzyme activity,
nutrient reservoir activity,
hydrogen ion transmembrane transporter activity,
manganese ion binding,
serine-type peptidase activity,
| details | | CFinderM000258 | cellular protein modification process,
protein neddylation,
phosphopyruvate hydratase complex,
NF-YB Transcription_Regulator(from PlantTFDB)
PLATZ Transcription_Regulator(from iTAK)
RLK-Pelle_LRR-VI-2 (from iTAK)
| details | | CFinderM000342 | ERF Transcription_Regulator(from PlantTFDB)
AP2/ERF-ERF Transcription_Regulator(from iTAK)
| details | | CFinderM000386 | C2H2 Transcription_Regulator(from PlantTFDB)
GH18 Glycoside_Hydrolases
protein neddylation,
Tify Transcription_Regulator(from iTAK)
| details | | CFinderM000398 | protein neddylation,
exocyst,
apoplast,
cellular protein modification process,
exocytosis,
Ubiquitin_mediated_proteolysis
cysteine-type endopeptidase activity,
small protein activating enzyme activity,
| details | | CFinderM000451 | protein neddylation,
Trihelix Transcription_Regulator(from PlantTFDB)
Ubiquitin_mediated_proteolysis
small protein activating enzyme activity,
cellular protein modification process,
| details | | CFinderM000452 | protein neddylation,
Trihelix Transcription_Regulator(from PlantTFDB)
cellular protein modification process,
Ubiquitin_mediated_proteolysis
small protein activating enzyme activity,
calcium-dependent phospholipid binding,
| details | | CFinderM000606 | histone_H2A_acetylation
CTP biosynthetic process,
histone_H4_acetylation
protein neddylation,
nucleoside_diphosphate_phosphorylation
UTP biosynthetic process,
GTP biosynthetic process,
carbohydrate phosphorylation,
chromatin remodeling,
| details | | CFinderM000654 | protein neddylation,
RLK-Pelle_CR4L (from iTAK)
cellular protein modification process,
Ubiquitin_mediated_proteolysis
| details | | CFinderM000663 | protein neddylation,
RLK-Pelle_RLCK-VIIa-2 (from iTAK)
chromosome,
DNA topological change,
DNA metabolic process,
apoplast,
cellular protein modification process,
Ubiquitin_mediated_proteolysis
small protein activating enzyme activity,
DNA topoisomerase (ATP-hydrolyzing) activity,
| details | | CFinderM000742 | protein neddylation,
cellular protein modification process,
Ubiquitin_mediated_proteolysis
Cysteine_and_methionine_metabolism
Tify Transcription_Regulator(from iTAK)
| details | | CFinderM000903 | protein neddylation,
RLK-Pelle_WAK_LRK10L-1 (from iTAK)
Ubiquitin_mediated_proteolysis
cellular protein modification process,
NAC Transcription_Regulator(from PlantTFDB)
| details | | CFinderM000904 | IWS1 Transcription_Regulator(from iTAK)
RLK-Pelle_WAK_LRK10L-1 (from iTAK)
Steroid_biosynthesis
GPI anchor metabolic process,
| details | | CFinderM001110 | Ubiquitin_mediated_proteolysis
acid-amino acid ligase activity,
protein neddylation,
cellular protein modification process,
small protein activating enzyme activity,
| details | | CFinderM001412 | protein neddylation,
PLATZ Transcription_Regulator(from iTAK)
RLK-Pelle_LRR-VI-2 (from iTAK)
cellular protein modification process,
Ubiquitin_mediated_proteolysis
RNA_degradation
small protein activating enzyme activity,
| details | | CFinderM001413 | protein neddylation,
IWS1 Transcription_Regulator(from iTAK)
RLK-Pelle_LRR-VI-2 (from iTAK)
C2C2-Dof Transcription_Regulator(from iTAK)
Dof Transcription_Regulator(from PlantTFDB)
Ubiquitin_mediated_proteolysis
cellular protein modification process,
small protein activating enzyme activity,
| details |
4.Expression profilings |
