|
1.Module annotation (GSEA enrichment result) | Function Annotation | FDR | Gene Ontolog | | CBM20 Carbohydrate-Binding_Modules | 0.001874385 | GFam | | GH77 Glycoside_Hydrolases | 0.001874385 | GFam | | membrane coat, | 0.01057681 | GO:0030117 | | 4-alpha-glucanotransferase activity, | 0.01836897 | GO:0004134 | | starch_binding | 0.022941847 | GO:2001070 |
2.Module member annotation | Gene ID | Annotation | Arabidopsis ortholog (Blast e-value) | | PH01000010G1470 | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | AT2G26200 (6.00E-154) | | PH01000109G0850 | Regulator of chromosome condensation (RCC1) family protein | AT1G27060 (1.40E-46) | | PH01000704G0200 | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | AT1G66680 (1.70E-82) | | PH01000908G0080 | Oligosaccharyltransferase complex/magnesium transporter family protein | AT1G61790 (9.00E-114) | | PH01000936G0470 | disproportionating enzyme 2 | AT2G40840 (0.00E+00) | | PH01001249G0550 | delta-adaptin | AT1G48760 (1.00E-155) | | PH01001495G0300 | prenylated RAB acceptor 1.H | AT4G27540 (8.50E-49) | | PH01001593G0400 | - | AT1G03250 (7.40E-46) | | PH01002910G0060 | Endonuclease/exonuclease/phosphatase family protein | AT1G65580 (1.10E-45) | | PH01003215G0050 | homolog of yeast sucrose nonfermenting 4 | AT1G09020 (1.00E-29) |
3.Direct connection functional modules | Module ID | Function Annotation | Overlap condition | | CFinderM001088 | CBM20 Carbohydrate-Binding_Modules
GH77 Glycoside_Hydrolases
katanin_complex
microtubule_severing
SNF2 Transcription_Regulator(from iTAK)
Starch_and_sucrose_metabolism
4-alpha-glucanotransferase activity,
starch_binding
| details | | CFinderM001093 | Rcd1-like Transcription_Regulator(from iTAK)
phagocytosis,
cytoskeleton,
protein dephosphorylation,
protein serine/threonine phosphatase activity,
| details | | CFinderM001155 | UDP-glucose:glycoprotein_glucosyltransferase_activity
nuclear pore,
binding,
protein transporter activity,
Proteasome
protein glycosylation,
| details | | CFinderM001242 | mitotic_spindle_assembly_checkpoint
WASH_complex
PHD Transcription_Regulator(from iTAK)
N-Glycan_biosynthesis
Various_types_of_N-glycan_biosynthesis
| details | | CFinderM001302 | membrane coat,
malic enzyme activity,
malate_dehydrogenase_(decarboxylating)_(NAD+)_activity
malate metabolic process,
| details | | CFinderM001424 | WASH_complex
N-Glycan_biosynthesis
Various_types_of_N-glycan_biosynthesis
Peroxisome
| details | | CFinderM001528 | SNARE_interactions_in_vesicular_transport
SNAP receptor activity,
Phagosome
| details | | CFinderM001714 | phosphatidylinositol_dephosphorylation
Ribosome_biogenesis_in_eukaryotes
RNA processing,
| details | | CFinderM001755 | STE_STE7 (from iTAK)
nucleotide-sugar transport,
S-adenosylmethionine_biosynthetic_process
carbohydrate transport,
| details | | CFinderM001799 | Various_types_of_N-glycan_biosynthesis
Base_excision_repair
N-Glycan_biosynthesis
nuclease activity,
endonuclease activity,
NAC Transcription_Regulator(from PlantTFDB)
| details | | CFinderM001846 | rRNA modification,
rRNA methyltransferase activity,
rRNA (adenine-N6,N6-)-dimethyltransferase activity,
tRNA aminoacylation,
ligase activity, forming aminoacyl-tRNA and related compounds,
tRNA aminoacylation for protein translation,
| details | | CFinderM001891 | Alanine,_aspartate_and_glutamate_metabolism
carbamoyl_phosphate_biosynthetic_process
glutamine_catabolic_process
clathrin_coat
membrane coat,
clathrin_coat_assembly
bZIP Transcription_Regulator(from PlantTFDB)
RNA metabolic process,
| details | | CFinderM001892 | phenylalanyl-tRNA aminoacylation,
Aminoacyl-tRNA_biosynthesis
tRNA aminoacylation,
phenylalanine-tRNA ligase activity,
WRKY Transcription_Regulator(from PlantTFDB)
tRNA binding,
| details |
4.Expression profilings |
