|
1.Module annotation (GSEA enrichment result) | Function Annotation | FDR | Gene Ontolog | | Various_types_of_N-glycan_biosynthesis | 0.025947826 | KEGG | | Base_excision_repair | 0.025947826 | KEGG | | N-Glycan_biosynthesis | 0.025947826 | KEGG | | nuclease activity, | 0.027527629 | GO:0004518 | | endonuclease activity, | 0.027527629 | GO:0004519 | | NAC Transcription_Regulator(from PlantTFDB) | 0.035100806 | GFam |
2.Module member annotation | Gene ID | Annotation | Arabidopsis ortholog (Blast e-value) | | PH01000070G1370 | Protein of unknown function DUF106, transmembrane | AT4G12590 (1.00E-61) | | PH01000101G1130 | - | AT5G16610 (1.70E-82) | | PH01000908G0080 | Oligosaccharyltransferase complex/magnesium transporter family protein | AT1G61790 (9.00E-114) | | PH01000910G0290 | - | - (-) | | PH01001005G0580 | endonuclease/exonuclease/phosphatase family protein | AT4G36050 (1.00E-129) | | PH01003505G0200 | Protein of unknown function (DUF1682) | AT4G24330 (6.00E-117) |
3.Direct connection functional modules | Module ID | Function Annotation | Overlap condition | | CFinderM000170 | cullin-RING ubiquitin ligase complex,
ubiquitin protein ligase binding,
ubiquitin-dependent protein catabolic process,
| details | | CFinderM000229 | GT2 GlycosylTransferases
NuA4_histone_acetyltransferase_complex
histone_H2A_acetylation
protein homooligomerization,
histone_H4_acetylation
chromatin remodeling,
negative_regulation_of_transcription,_DNA-templated
RNA modification,
pseudouridine synthesis,
| details | | CFinderM000256 | signal recognition particle,
proton-transporting two-sector ATPase complex, proton-transporting domain,
| details | | CFinderM000389 | protein folding,
response to heat,
unfolded protein binding,
| details | | CFinderM000453 | carbon fixation,
response to wounding,
Lysine_degradation
SET Transcription_Regulator(from iTAK)
| details | | CFinderM000501 | oligosaccharide metabolic process,
mannosyl-oligosaccharide glucosidase activity,
Peroxisome
N-Glycan_biosynthesis
| details | | CFinderM000540 | condensin_complex
CK1_CK1 (from iTAK)
mitotic_chromosome_condensation
| details | | CFinderM000627 | DNA primase activity,
DNA_replication
| details | | CFinderM000658 | NAC Transcription_Regulator(from PlantTFDB)
heme oxidation,
heme oxygenase (decyclizing) activity,
hydrogen-translocating pyrophosphatase activity,
proton transport,
| details | | CFinderM000670 | NAC Transcription_Regulator(from PlantTFDB)
RLK-Pelle_LRR-III (from iTAK)
| details | | CFinderM000734 | WASH_complex
cytoskeleton,
phagocytosis,
malate metabolic process,
cellular carbohydrate metabolic process,
malate dehydrogenase activity,
L-malate dehydrogenase activity,
| details | | CFinderM001015 | DNA primase activity,
| details | | CFinderM001092 | CBM20 Carbohydrate-Binding_Modules
GH77 Glycoside_Hydrolases
membrane coat,
4-alpha-glucanotransferase activity,
starch_binding
| details | | CFinderM001203 | SNARE_interactions_in_vesicular_transport
ubiquitin-dependent protein catabolic process,
| details | | CFinderM001229 | Phenylalanine,_tyrosine_and_tryptophan_biosynthesis
| details | | CFinderM001242 | mitotic_spindle_assembly_checkpoint
WASH_complex
PHD Transcription_Regulator(from iTAK)
N-Glycan_biosynthesis
Various_types_of_N-glycan_biosynthesis
| details | | CFinderM001248 | DNA primase activity,
| details | | CFinderM001253 | CMGC_CLK (from iTAK)
membrane,
| details | | CFinderM001261 | thymidylate synthase activity,
dihydrofolate reductase activity,
dTMP biosynthetic process,
ribosome biogenesis,
nucleotidyltransferase activity,
| details | | CFinderM001360 | cysteine-type peptidase activity,
galactosyltransferase activity,
protein glycosylation,
| details | | CFinderM001402 | phosphatidylinositol-mediated signaling,
RNA 3'-end processing,
RNA polyadenylation,
phosphatidylinositol_biosynthetic_process
phosphatidylinositol phosphorylation,
1-phosphatidylinositol_4-kinase_activity
Inositol_phosphate_metabolism
Phosphatidylinositol_signaling_system
mRNA_surveillance_pathway
polynucleotide adenylyltransferase activity,
| details | | CFinderM001424 | WASH_complex
N-Glycan_biosynthesis
Various_types_of_N-glycan_biosynthesis
Peroxisome
| details | | CFinderM001581 | WASH_complex
DNA_ligation_involved_in_DNA_repair
drug_binding
DNA_ligase_activity
DNA ligase (ATP) activity,
DNA recombination,
DNA repair,
| details | | CFinderM001638 | tRNA methylation,
tRNA (guanine-N1-)-methyltransferase activity,
proton-transporting two-sector ATPase complex, proton-transporting domain,
proton-transporting V-type ATPase, V0 domain,
NAC Transcription_Regulator(from PlantTFDB)
| details | | CFinderM001789 | proton-transporting V-type ATPase, V0 domain,
proton-transporting two-sector ATPase complex, proton-transporting domain,
C3H Transcription_Regulator(from PlantTFDB)
ATP hydrolysis coupled proton transport,
DNA repair,
nuclease activity,
endonuclease activity,
hydrogen ion transmembrane transporter activity,
| details | | CFinderM001830 | WASH_complex
drug_binding
oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor,
Butanoate_metabolism
Pyruvate_metabolism
Citrate_cycle_(TCA_cycle)
Glycolysis_/_Gluconeogenesis
| details |
4.Expression profilings |
