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1.Module annotation (GSEA enrichment result) | Function Annotation | FDR | Gene Ontolog | | cullin-RING ubiquitin ligase complex, | 0.005892974 | GO:0031461 | | SNF2 Transcription_Regulator(from iTAK) | 0.010672624 | GFam | | Nucleotide_excision_repair | 0.042409047 | KEGG | | cell redox homeostasis, | 0.044072282 | GO:0045454 | | Ubiquitin_mediated_proteolysis | 0.044072282 | KEGG | | ubiquitin-dependent protein catabolic process, | 0.044072282 | GO:0006511 |
2.Module member annotation | Gene ID | Annotation | Arabidopsis ortholog (Blast e-value) | | PH01000012G0140 | thioredoxin family protein | AT4G04950 (0.00E+00) | | PH01000561G0580 | Coiled-coil domain-containing protein 55 (DUF2040) | AT2G27285 (1.20E-61) | | PH01000767G0400 | cullin4 | AT5G46210 (0.00E+00) | | PH01001006G0490 | BTB-POZ and MATH domain 2 | AT3G06190 (6.30E-54) | | PH01001758G0180 | Beige/BEACH domain ;WD domain, G-beta repeat protein | AT1G03060 (0.00E+00) | | PH01002725G0050 | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related | AT1G50410 (0.00E+00) | | PH01005983G0010 | Chaperone DnaJ-domain superfamily protein | AT2G01710 (7.80E-31) |
3.Direct connection functional modules | Module ID | Function Annotation | Overlap condition | | CFinderM000008 | TKL-Pl-4 (from iTAK)
RLK-Pelle_RLCK-VIIa-2 (from iTAK)
transferase activity, transferring phosphorus-containing groups,
protein phosphorylation,
Spliceosome
protein kinase activity,
ATP binding,
protein serine/threonine kinase activity,
exocyst,
chloroplast,
| details | | CFinderM000239 | cullin-RING ubiquitin ligase complex,
glycogen_phosphorylase_activity
protein_binding,_bridging
actin filament binding,
phosphatidylserine biosynthetic process,
| details | | CFinderM000817 | riboflavin synthase complex,
ubiquitin protein ligase binding,
cullin-RING ubiquitin ligase complex,
Riboflavin_metabolism
riboflavin biosynthetic process,
cellular amino acid biosynthetic process,
Nucleotide_excision_repair
| details | | CFinderM001168 | cullin-RING ubiquitin ligase complex,
SNF2 Transcription_Regulator(from iTAK)
glycogen_phosphorylase_activity
Nucleotide_excision_repair
Ubiquitin_mediated_proteolysis
| details | | CFinderM001279 | cullin-RING ubiquitin ligase complex,
ubiquitin protein ligase binding,
Nucleotide_excision_repair
Ubiquitin_mediated_proteolysis
| details | | CFinderM001572 | Protein_processing_in_endoplasmic_reticulum
heat shock protein binding,
| details | | CFinderM001573 | protein refolding,
histone_lysine_methylation
cellular protein metabolic process,
histone_binding
zinc ion binding,
histone-lysine N-methyltransferase activity,
C2H2 Transcription_Regulator(from PlantTFDB)
| details |
4.Expression profilings |
