|
1.Module annotation (GSEA enrichment result) | Function Annotation | FDR | Gene Ontolog | | Golgi-associated vesicle, | 0.012493946 | GO:0005798 | | binding, | 0.014860126 | GO:0005488 | | Terpenoid_backbone_biosynthesis | 0.019330551 | KEGG | | guanyl-nucleotide exchange factor activity, | 0.024440465 | GO:0005085 | | COPI vesicle coat, | 0.035217544 | GO:0030126 | | membrane coat, | 0.035217544 | GO:0030117 |
2.Module member annotation | Gene ID | Annotation | Arabidopsis ortholog (Blast e-value) | | PH01000004G2930 | Transmembrane amino acid transporter family protein | AT1G08230 (1.00E-101) | | PH01000044G0590 | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | AT2G17970 (2.00E-107) | | PH01000284G1000 | VQ motif-containing protein | AT1G28280 (6.80E-37) | | PH01000602G0260 | microtubule-associated proteins 70-2 | AT1G24764 (8.00E-168) | | PH01001292G0230 | guanyl-nucleotide exchange factors;GTPase binding;GTP binding | AT4G16340 (0.00E+00) | | PH01001302G0470 | transcription activators | AT2G35110 (0.00E+00) | | PH01001719G0420 | ARM-repeat/Tetratricopeptide repeat (TPR)-like protein | AT5G10200 (0.00E+00) | | PH01002017G0310 | armadillo repeat kinesin 3 | AT1G12430 (0.00E+00) | | PH01002033G0310 | NAD(P)-binding Rossmann-fold superfamily protein | AT5G52810 (1.00E-49) | | PH01002613G0290 | coatomer gamma-2 subunit, putative / gamma-2 coat protein, putative / gamma-2 COP, putative | AT4G34450 (0.00E+00) | | PH01003460G0040 | Ubiquitin-specific protease family C19-related protein | AT1G16860 (6.00E-156) | | PH01003543G0110 | geranylgeranyl reductase | AT4G38460 (4.10E-78) |
3.Direct connection functional modules | Module ID | Function Annotation | Overlap condition | | CFinderM000084 | cell wall macromolecule catabolic process,
chitin catabolic process,
WRKY Transcription_Regulator(from PlantTFDB)
defense response to fungus,
ammonium_transport
ammonium_transmembrane_transport
defense response to bacterium,
metabolic process,
chitinase activity,
| details | | CFinderM000365 | microtubule-based movement,
microtubule associated complex,
microtubule motor activity,
regulation of Rab GTPase activity,
Rab GTPase activator activity,
| details | | CFinderM000461 | STE_STE11 (from iTAK)
zinc_ion_transmembrane_transport
cellular component organization,
actin cytoskeleton organization,
| details | | CFinderM001045 | membrane,
1,3-beta-D-glucan synthase complex,
Glutathione_metabolism
MYB_related Transcription_Regulator(from PlantTFDB)
Ascorbate_and_aldarate_metabolism
MYB-related Transcription_Regulator(from iTAK)
| details | | CFinderM001303 | 1,3-beta-D-glucan synthase complex,
Methane_metabolism
(1->3)-beta-D-glucan biosynthetic process,
drug transmembrane transport,
membrane,
antiporter activity,
drug transmembrane transporter activity,
1,3-beta-D-glucan synthase activity,
| details | | CFinderM001336 | Golgi-associated vesicle,
membrane coat,
COPI vesicle coat,
Homologous_recombination
Terpenoid_backbone_biosynthesis
isoprenoid biosynthetic process,
binding,
| details | | CFinderM001342 | | details | | CFinderM001371 | guanyl-nucleotide exchange factor activity,
small GTPase mediated signal transduction,
microtubule associated complex,
binding,
microtubule-based movement,
| details | | CFinderM001377 | C2H2 Transcription_Regulator(from PlantTFDB)
| details | | CFinderM001541 | Terpenoid_backbone_biosynthesis
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity,
1,3-beta-D-glucan synthase complex,
(1->3)-beta-D-glucan biosynthetic process,
terpenoid biosynthetic process,
iron-sulfur cluster assembly,
| details | | CFinderM001542 | guanyl-nucleotide exchange factor activity,
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity,
small GTPase mediated signal transduction,
signal transduction,
terpenoid biosynthetic process,
cellular component organization,
Terpenoid_backbone_biosynthesis
actin cytoskeleton organization,
intracellular,
| details | | CFinderM001575 | protein methylation,
ubiquitin thiolesterase activity,
ubiquitin-dependent protein catabolic process,
methyltransferase activity,
| details | | CFinderM001673 | HAUS_complex
RLK-Pelle_LRR-V (from iTAK)
STE_STE11 (from iTAK)
spindle_assembly
zinc_ion_transmembrane_transport
| details | | CFinderM001710 | membrane,
CBM22 Carbohydrate-Binding_Modules
GH10 Glycoside_Hydrolases
hydrolase activity, acting on glycosyl bonds,
hydrogen-translocating pyrophosphatase activity,
transporter activity,
inorganic diphosphatase activity,
proton transport,
transport,
isoprenoid biosynthetic process,
Terpenoid_backbone_biosynthesis
Oxidative_phosphorylation
| details | | CFinderM001713 | microtubule associated complex,
microtubule-based movement,
microtubule motor activity,
guanyl-nucleotide exchange factor activity,
cellular component organization,
actin cytoskeleton organization,
small GTPase mediated signal transduction,
| details | | CFinderM001838 | ubiquitin-dependent protein catabolic process,
ubiquitin thiolesterase activity,
| details | | CFinderM001881 | cysteine metabolic process,
Sulfur_relay_system
Thiamine_metabolism
cysteine desulfurase activity,
microtubule associated complex,
microtubule-based movement,
| details | | CFinderM001893 | Golgi-associated vesicle,
Terpenoid_backbone_biosynthesis
membrane coat,
COPI vesicle coat,
isoprenoid biosynthetic process,
| details |
4.Expression profilings |
