|
1.Module annotation (GSEA enrichment result) | Function Annotation | FDR | Gene Ontolog | | Alanine,_aspartate_and_glutamate_metabolism | 0.00150007 | KEGG | | TKL-Pl-2 (from iTAK) | 0.002750129 | GFam | | carbamoyl_phosphate_biosynthetic_process | 0.0028543 | GO:0070409 | | glutamine_catabolic_process | 0.0028543 | GO:0006543 | | clathrin_coat | 0.003994066 | GO:0030118 | | clathrin_coat_assembly | 0.01519964 | GO:0048268 | | Pyrimidine_metabolism | 0.041133931 | KEGG | | bZIP Transcription_Regulator(from PlantTFDB) | 0.048932056 | GFam |
2.Module member annotation | Gene ID | Annotation | Arabidopsis ortholog (Blast e-value) | | PH01000045G1370 | - | AT5G45410 (4.20E-89) | | PH01000068G0070 | Basic-leucine zipper (bZIP) transcription factor family protein | AT2G40950 (3.30E-66) | | PH01000138G1440 | epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related | AT2G25430 (0.00E+00) | | PH01000231G1040 | DNAse I-like superfamily protein | AT5G11350 (6.90E-76) | | PH01000497G0620 | prenylated RAB acceptor 1.B4 | AT2G38360 (6.90E-27) | | PH01000662G0340 | carbamoyl phosphate synthetase A | AT3G27740 (8.00E-104) | | PH01002850G0100 | Leucine-rich repeat protein kinase family protein | AT1G04210 (1.00E-158) | | PH01003376G0110 | Bax inhibitor-1 family protein | AT4G15470 (5.10E-83) |
3.Direct connection functional modules | Module ID | Function Annotation | Overlap condition | | CFinderM000671 | SET Transcription_Regulator(from iTAK)
DNA repair,
Base_excision_repair
nuclease activity,
Ubiquitin_mediated_proteolysis
| details | | CFinderM001077 | SNARE_interactions_in_vesicular_transport
| details | | CFinderM001146 | TKL-Pl-2 (from iTAK)
chromosome,
Homologous_recombination
DNA topological change,
DNA topoisomerase activity,
DNA topoisomerase type I activity,
| details | | CFinderM001204 | Mre11 complex,
nucleolus,
DNA repair,
| details | | CFinderM001429 | negative_regulation_of_transcription,_DNA-templated
FMN binding,
| details | | CFinderM001483 | eukaryotic translation initiation factor 3 complex,
cytoplasm,
valyl-tRNA aminoacylation,
aminoacyl-tRNA_editing_activity
valine-tRNA ligase activity,
guanyl nucleotide binding,
G-protein_beta/gamma-subunit_complex_binding
G-protein coupled receptor signaling pathway,
Aminoacyl-tRNA_biosynthesis
| details | | CFinderM001585 | bZIP Transcription_Regulator(from PlantTFDB)
| details | | CFinderM001623 | Ribosome_biogenesis_in_eukaryotes
ribosome biogenesis,
GTP binding,
| details | | CFinderM001669 | CBM49 Carbohydrate-Binding_Modules
GH9 Glycoside_Hydrolases
phosphatidylinositol_dephosphorylation
| details | | CFinderM001755 | STE_STE7 (from iTAK)
nucleotide-sugar transport,
S-adenosylmethionine_biosynthetic_process
carbohydrate transport,
| details | | CFinderM001780 | S-adenosylmethionine_biosynthetic_process
Cysteine_and_methionine_metabolism
bZIP Transcription_Regulator(from PlantTFDB)
methionine adenosyltransferase activity,
| details | | CFinderM001839 | GPI anchor metabolic process,
DNA methylation,
DNA recombination,
Base_excision_repair
Ubiquitin_mediated_proteolysis
| details | | CFinderM001856 | GPI anchor metabolic process,
Base_excision_repair
nuclease activity,
| details | | CFinderM001861 | SNARE_interactions_in_vesicular_transport
acid-amino acid ligase activity,
Ubiquitin_mediated_proteolysis
mRNA_surveillance_pathway
| details | | CFinderM001869 | DNA recombination,
(1->3)-beta-D-glucan biosynthetic process,
1,3-beta-D-glucan synthase complex,
Ubiquitin_mediated_proteolysis
| details | | CFinderM001888 | Alanine,_aspartate_and_glutamate_metabolism
carbamoyl_phosphate_biosynthetic_process
glutamine_catabolic_process
clathrin_coat_assembly
clathrin_coat
1-phosphatidylinositol_binding
clathrin_binding
phospholipid binding,
Pyrimidine_metabolism
cell redox homeostasis,
| details | | CFinderM001890 | clathrin_coat_assembly
clathrin_coat
1-phosphatidylinositol_binding
clathrin_binding
RNA_degradation
regulation of transcription, DNA-dependent,
phospholipid binding,
| details | | CFinderM001891 | Alanine,_aspartate_and_glutamate_metabolism
carbamoyl_phosphate_biosynthetic_process
glutamine_catabolic_process
clathrin_coat
membrane coat,
clathrin_coat_assembly
bZIP Transcription_Regulator(from PlantTFDB)
RNA metabolic process,
| details |
4.Expression profilings |
