CFinderM001134's details annotation
1.Tissue preferential analysis
root  culm  leaf  shoot  sheath  rhizome  bud  panicle  
     
2.Stress differential analysis
     
     
Protein:Yellow color--query protein     Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein     Blue--proteins own interaction and negative co-expression relationship with target protein     Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

1.Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog
Lysine_biosynthesis0.025217KEGG
regulation of translational initiation,0.030560608GO:0006446
eukaryotic translation initiation factor 3 complex,0.046504894GO:0005852
spliceosomal complex,0.046504894GO:0005681
Ribosome0.046504894KEGG

2.Module member annotation

Gene IDAnnotationArabidopsis ortholog (Blast e-value)
PH01000038G0790eukaryotic translation initiation factor 3KAT4G33250 (7.10E-91)
PH01000043G1970-AT4G37090 (1.80E-22)
PH01000063G1250RING/U-box superfamily proteinAT2G15260 (9.20E-09)
PH01000134G0410BEL1-like homeodomain 6AT4G34610 (4.40E-94)
PH01000332G1000Eukaryotic aspartyl protease family proteinAT4G35880 (1.00E-125)
PH01000364G0200dihydrodipicolinate synthaseAT2G45440 (1.00E-135)
PH01000442G0350Ribosomal protein S5 domain 2-like superfamily proteinAT3G49080 (1.10E-90)
PH01000877G0280Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein familyAT3G44220 (5.00E-42)
PH01001074G0410proline extensin-like receptor kinase 1AT3G24550 (3.00E-157)
PH01002019G0160Ribosomal protein L19 family proteinAT4G11630 (4.20E-51)
PH01002073G0270P-loop containing nucleoside triphosphate hydrolases superfamily proteinAT4G30100 (0.00E+00)
PH01002164G0040-- (-)
PH01003144G0060-AT3G58050 (0.00E+00)
PH01003249G0180zinc finger nuclease 3AT5G16540 (1.20E-46)
PH01003365G0100-- (-)

3.Direct connection functional modules

Module IDFunction AnnotationOverlap condition
CFinderM000300nuclear mRNA splicing, via spliceosome,
dihydrodipicolinate synthase activity,
lysine biosynthetic process via diaminopimelate,
Lysine_biosynthesis
spliceosomal complex,
lyase activity,
snRNA_binding
rRNA binding,
metabolic process,
details
CFinderM000826dihydrodipicolinate synthase activity,
Lysine_biosynthesis
lysine biosynthetic process via diaminopimelate,
spliceosomal complex,
nuclear mRNA splicing, via spliceosome,
lyase activity,
GT48 GlycosylTransferases
C3H Transcription_Regulator(from PlantTFDB)
rRNA binding,
details
CFinderM000959RLK-Pelle_PERK-1 (from iTAK)
details
CFinderM000986CMGC_MAPK (from iTAK)
HB-BELL Transcription_Regulator(from iTAK)
TALE Transcription_Regulator(from PlantTFDB)
details
CFinderM001044details
CFinderM001166DNA_replication
Nucleotide_excision_repair
Mismatch_repair
Riboflavin_metabolism
histone acetylation,
chromatin modification,
chromatin silencing at telomere,
details
CFinderM001209Lysine_biosynthesis
dihydrodipicolinate synthase activity,
lysine biosynthetic process via diaminopimelate,
details
CFinderM001269regulation of translational initiation,
'de novo' IMP biosynthetic process,
autophagy,
phosphoribosylformylglycinamidine cyclo-ligase activity,
eukaryotic translation initiation factor 3 complex,
cytoplasm,
ribosome binding,
details
CFinderM001428nuclear mRNA splicing, via spliceosome,
spliceosomal complex,
cell volume homeostasis,
COPII_vesicle_coating
lysine biosynthetic process via diaminopimelate,
chloride transport,
dihydrodipicolinate synthase activity,
snRNA_binding
Lysine_biosynthesis
details
CFinderM001441arsenite_transport
arsenite transmembrane transporter activity,
details
CFinderM001464MYB-related Transcription_Regulator(from iTAK)
MYB_related Transcription_Regulator(from PlantTFDB)
RNA processing,
details
CFinderM001471regulation of translational initiation,
eukaryotic translation initiation factor 3 complex,
WRKY Transcription_Regulator(from PlantTFDB)
details
CFinderM001569Alanine,_aspartate_and_glutamate_metabolism
TAZ Transcription_Regulator(from iTAK)
Group-Pl-3 (from iTAK)
CMGC_CLK (from iTAK)
NF-YC Transcription_Regulator(from PlantTFDB)
HB-other Transcription_Regulator(from PlantTFDB)
arginine biosynthetic process,
'de novo' IMP biosynthetic process,
eukaryotic translation elongation factor 1 complex,
argininosuccinate synthase activity,
phosphoribosylformylglycinamidine cyclo-ligase activity,
details
CFinderM001592DNA_ligation_involved_in_DNA_repair
DNA_ligase_activity
DNA ligase (ATP) activity,
regulation_of_cell_cycle
DNA recombination,
C3H Transcription_Regulator(from PlantTFDB)
TALE Transcription_Regulator(from PlantTFDB)
SNF2 Transcription_Regulator(from iTAK)
HB-BELL Transcription_Regulator(from iTAK)
regulation_of_cyclin-dependent_protein_serine/threonine_kinase_activity
Mismatch_repair
Base_excision_repair
Nucleotide_excision_repair
DNA_replication
DNA binding,
details
CFinderM001749phosphoribosylformylglycinamidine cyclo-ligase activity,
autophagy,
'de novo' IMP biosynthetic process,
cellular protein metabolic process,
details
CFinderM001773Group-Pl-3 (from iTAK)
phosphoribosylformylglycinamidine cyclo-ligase activity,
'de novo' IMP biosynthetic process,
intracellular,
details
CFinderM001790regulation of translational initiation,
ribosome binding,
eukaryotic translation initiation factor 3 complex,
translation initiation factor activity,
details
CFinderM001854HSF Transcription_Regulator(from PlantTFDB)
fatty-acyl-CoA binding,
details

4.Expression profilings


Show details about module gene expression profiling