|
1.Module annotation (GSEA enrichment result) | Function Annotation | FDR | Gene Ontolog | | cis-Golgi network, | 0.015617431 | GO:0005801 | | peptide-methionine_(R)-S-oxide_reductase_activity | 0.019288925 | GO:0033743 |
2.Module member annotation | Gene ID | Annotation | Arabidopsis ortholog (Blast e-value) | | PH01000145G1150 | Sec14p-like phosphatidylinositol transfer family protein | AT2G21520 (0.00E+00) | | PH01000811G0740 | Argonaute family protein | AT2G27880 (0.00E+00) | | PH01001057G0330 | P-loop containing nucleoside triphosphate hydrolases superfamily protein | AT3G45850 (0.00E+00) | | PH01001268G0150 | - | - (-) | | PH01001954G0300 | sec34-like family protein | AT1G73430 (1.00E-167) | | PH01002313G0050 | methionine sulfoxide reductase B 1 | AT1G53670 (1.70E-66) |
3.Direct connection functional modules | Module ID | Function Annotation | Overlap condition | | CFinderM000016 | protein phosphorylation,
protein kinase activity,
transferase activity, transferring phosphorus-containing groups,
protein serine/threonine kinase activity,
ATP binding,
RLK-Pelle_LRR-XII-1 (from iTAK)
RLK-Pelle_DLSV (from iTAK)
RLK-Pelle_WAK (from iTAK)
ADP_binding
polysaccharide_binding
transmembrane_transporter_activity
WRKY Transcription_Regulator(from PlantTFDB)
recognition of pollen,
transmembrane transport,
defense response,
RLK-Pelle_L-LEC (from iTAK)
membrane,
integral to membrane,
RLK-Pelle_SD-2b (from iTAK)
RLK-Pelle_WAK_LRK10L-1 (from iTAK)
ATPase activity,
substrate-specific transmembrane transporter activity,
RLK-Pelle_LRR-XI-1 (from iTAK)
6-phosphofructokinase complex,
| details | | CFinderM000109 | Glyoxylate_and_dicarboxylate_metabolism
Peroxisome
FMN binding,
Alanine,_aspartate_and_glutamate_metabolism
Glycine,_serine_and_threonine_metabolism
catalytic activity,
| details | | CFinderM000189 | phosphate ion transport,
cellular carbohydrate metabolic process,
malate metabolic process,
L-malate dehydrogenase activity,
inorganic phosphate transmembrane transporter activity,
malate dehydrogenase activity,
Carbon_fixation_in_photosynthetic_organisms
Pyruvate_metabolism
Citrate_cycle_(TCA_cycle)
Glyoxylate_and_dicarboxylate_metabolism
| details | | CFinderM000235 | proton-transporting ATP synthase complex, coupling factor F(o),
intracellular,
Photosynthesis
Oxidative_phosphorylation
ATP synthesis coupled proton transport,
hydrogen ion transmembrane transporter activity,
| details | | CFinderM000500 | WRKY Transcription_Regulator(from PlantTFDB)
sequence-specific DNA binding,
sequence-specific DNA binding transcription factor activity,
| details | | CFinderM000659 | ATP-dependent peptidase activity,
| details | | CFinderM001423 | Glycine,_serine_and_threonine_metabolism
intracellular,
Arachidonic_acid_metabolism
glutathione peroxidase activity,
| details | | CFinderM001531 | GT1 GlycosylTransferases
lipid glycosylation,
positive_regulation_of_transcription,_DNA-templated
cis-Golgi network,
thylakoid,
sucrose-phosphate synthase activity,
photosystem I,
transcription initiation from RNA polymerase II promoter,
sucrose metabolic process,
Basal_transcription_factors
Starch_and_sucrose_metabolism
| details | | CFinderM001532 | GT1 GlycosylTransferases
sucrose-phosphate synthase activity,
lipid glycosylation,
positive_regulation_of_transcription,_DNA-templated
cis-Golgi network,
thylakoid,
transcription initiation from RNA polymerase II promoter,
fructose_6-phosphate_metabolic_process
photosystem I,
6-phosphofructokinase complex,
sucrose metabolic process,
| details | | CFinderM001540 | DNA polymerase III complex,
alpha-Linolenic_acid_metabolism
Fatty_acid_metabolism
Terpenoid_backbone_biosynthesis
3-hydroxyacyl-CoA_dehydrogenase_activity
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity,
peptide-methionine-(S)-S-oxide reductase activity,
fatty acid metabolic process,
terpenoid biosynthetic process,
iron-sulfur cluster assembly,
| details | | CFinderM001645 | vesicle-mediated transport,
lipid glycosylation,
GT1 GlycosylTransferases
vesicle docking involved in exocytosis,
| details | | CFinderM001663 | DNA polymerase III complex,
GRAS Transcription_Regulator(from PlantTFDB)
DNA_replication
DNA-directed DNA polymerase activity,
| details |
4.Expression profilings |
