CFinderM001711's details annotation
1.Tissue preferential analysis
root  culm  leaf  shoot  sheath  rhizome  bud  panicle  
     
2.Stress differential analysis
     
     
Protein:Yellow color--query protein     Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein     Blue--proteins own interaction and negative co-expression relationship with target protein     Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

1.Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog
intracellular protein transport,0.04508028GO:0006886
binding,0.048176861GO:0005488

2.Module member annotation

Gene IDAnnotationArabidopsis ortholog (Blast e-value)
PH01000238G0560Ras-related small GTP-binding family proteinAT3G62560 (7.10E-91)
PH01000464G0350SAC3/GANP/Nin1/mts3/eIF-3 p25 familyAT2G39340 (1.00E-147)
PH01000855G0300HEAT repeat-containing proteinAT5G01400 (8.00E-143)
PH01001006G0450Nucleotidyltransferase family proteinAT4G00060 (2.00E-145)
PH01003031G0040-- (-)
PH01003168G0050bindingAT5G47690 (0.00E+00)

3.Direct connection functional modules

Module IDFunction AnnotationOverlap condition
CFinderM000818SNF2 Transcription_Regulator(from iTAK)
GTP binding,
Protein_processing_in_endoplasmic_reticulum
intracellular protein transport,
details
CFinderM000938proton-transporting two-sector ATPase complex, proton-transporting domain,
proton-transporting V-type ATPase, V0 domain,
binding,
mRNA_surveillance_pathway
hydrogen ion transmembrane transporter activity,
ATP hydrolysis coupled proton transport,
TORC1_complex
Phagosome
Oxidative_phosphorylation
phosphotransferase activity, alcohol group as acceptor,
TOR_signaling
rRNA_catabolic_process
details
CFinderM001261thymidylate synthase activity,
dihydrofolate reductase activity,
dTMP biosynthetic process,
ribosome biogenesis,
nucleotidyltransferase activity,
details
CFinderM001390dTMP biosynthetic process,
dihydrofolate reductase activity,
thymidylate synthase activity,
mRNA_surveillance_pathway
details
CFinderM001411proton-transporting V-type ATPase, V0 domain,
proton-transporting two-sector ATPase complex, proton-transporting domain,
RNA metabolic process,
ATP hydrolysis coupled proton transport,
details
CFinderM001638tRNA methylation,
tRNA (guanine-N1-)-methyltransferase activity,
proton-transporting two-sector ATPase complex, proton-transporting domain,
proton-transporting V-type ATPase, V0 domain,
NAC Transcription_Regulator(from PlantTFDB)
details
CFinderM001776Protein_processing_in_endoplasmic_reticulum
U4/U6_x_U5_tri-snRNP_complex
intracellular protein transport,
GTP binding,
intracellular,
nuclear mRNA splicing, via spliceosome,
small GTPase mediated signal transduction,
details
CFinderM001777Ubiquitin_mediated_proteolysis
protein folding,
details
CFinderM001778GT16 GlycosylTransferases
oligosaccharide biosynthetic process,
Golgi stack,
7-methylguanosine mRNA capping,
mRNA processing,
alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity,
mRNA guanylyltransferase activity,
N-Glycan_biosynthesis
Various_types_of_N-glycan_biosynthesis
binding,
details
CFinderM001798proton-transporting V-type ATPase, V0 domain,
proton-transporting two-sector ATPase complex, proton-transporting domain,
ATP hydrolysis coupled proton transport,
Phagosome
Oxidative_phosphorylation
details
CFinderM001841proton-transporting V-type ATPase, V0 domain,
proton-transporting two-sector ATPase complex, proton-transporting domain,
details
CFinderM001883Phenylalanine,_tyrosine_and_tryptophan_biosynthesis
tyrosine biosynthetic process,
prephenate dehydrogenase (NADP+) activity,
prephenate_dehydrogenase_activity
SNF2 Transcription_Regulator(from iTAK)
RNA_polymerase
details

4.Expression profilings