CFinderM001017's details annotation
1.Tissue preferential analysis
root  culm  leaf  shoot  sheath  rhizome  bud  panicle  
     
2.Stress differential analysis
     
     
Protein:Yellow color--query protein     Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein     Blue--proteins own interaction and negative co-expression relationship with target protein     Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

1.Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog
calcium-dependent cysteine-type endopeptidase activity,0.003124951GO:0004198
mechanically-gated_ion_channel_activity0.003124951GO:0008381
RNA_degradation0.020270217KEGG

2.Module member annotation

Gene IDAnnotationArabidopsis ortholog (Blast e-value)
PH01000062G0240calpain-type cysteine protease familyAT1G55350 (0)
PH01000082G0800CW-type Zinc FingerAT3G62900 (1.00E-104)
PH01000238G0300bindingAT3G06670 (1.00E-101)
PH01000397G0970transcription regulatorsAT1G02080 (0.00E+00)
PH01001226G0090-- (-)
PH01001553G0280-AT2G48060 (0.00E+00)

3.Direct connection functional modules

Module IDFunction AnnotationOverlap condition
CFinderM000068cellular protein modification process,
ubiquitin-protein ligase activity,
Ubiquitin_mediated_proteolysis
binding,
intracellular,
protein binding,
CE8 Carbohydrate_Esterases
GH28 Glycoside_Hydrolases
Alfin-like Transcription_Regulator(from iTAK)
SWI/SNF-SWI3 Transcription_Regulator(from iTAK)
TORC1_complex
details
CFinderM000112SNF2 Transcription_Regulator(from iTAK)
chromatin remodeling,
ATP-dependent chromatin remodeling,
CE8 Carbohydrate_Esterases
nucleic acid binding,
helicase activity,
5'-3' exoribonuclease activity,
nucleosome binding,
GT1 GlycosylTransferases
cell wall modification,
nucleus,
cell wall,
nucleobase-containing compound metabolic process,
exonuclease activity,
details
CFinderM000590Ribosome
translation,
structural constituent of ribosome,
SNF2 Transcription_Regulator(from iTAK)
intracellular,
RNA_degradation
details
CFinderM001457mRNA_surveillance_pathway
Diterpenoid_biosynthesis
CAMTA Transcription_Regulator(from PlantTFDB)
protein binding,
mechanically-gated_ion_channel_activity
details
CFinderM001525MYB-related Transcription_Regulator(from iTAK)
details
CFinderM001546calcium-dependent cysteine-type endopeptidase activity,
mechanically-gated_ion_channel_activity
GH17 Glycoside_Hydrolases
CBM43 Carbohydrate-Binding_Modules
MYB-related Transcription_Regulator(from iTAK)
endoplasmic reticulum,
integral to membrane,
details
CFinderM001782ubiquitin-dependent protein catabolic process,
ubiquitin thiolesterase activity,
mechanically-gated_ion_channel_activity
SNF2 Transcription_Regulator(from iTAK)
details

4.Expression profilings