|
1.Module annotation (GSEA enrichment result) | Function Annotation | FDR | Gene Ontolog | | valyl-tRNA aminoacylation, | 0.007216719 | GO:0006438 | | eukaryotic translation initiation factor 3 complex, | 0.0144091 | GO:0005852 | | cytoplasm, | 0.0144091 | GO:0005737 | | aminoacyl-tRNA_editing_activity | 0.028513426 | GO:0002161 | | valine-tRNA ligase activity, | 0.028513426 | GO:0004832 | | Aminoacyl-tRNA_biosynthesis | 0.038516017 | KEGG | | NAC Transcription_Regulator(from PlantTFDB) | 0.040869929 | GFam | | tRNA aminoacylation for protein translation, | 0.041251799 | GO:0006418 |
2.Module member annotation | Gene ID | Annotation | Arabidopsis ortholog (Blast e-value) | | PH01000021G0720 | NAC domain containing protein 53 | AT3G10500 (3.40E-65) | | PH01000127G0800 | - | AT1G30240 (1.10E-36) | | PH01000203G0670 | Serinc-domain containing serine and sphingolipid biosynthesis protein | AT1G16180 (2.00E-119) | | PH01000469G0130 | valyl-tRNA synthetase / valine--tRNA ligase (VALRS) | AT1G14610 (2.00E-149) | | PH01000853G0420 | Protein of unknown function (DUF1005) | AT5G17640 (2.00E-127) | | PH01001030G0310 | translation initiation factor 3 subunit H1 | AT1G10840 (4.00E-149) | | PH01001134G0580 | - | AT1G26750 (2.00E-08) |
3.Direct connection functional modules | Module ID | Function Annotation | Overlap condition | | CFinderM000615 | cellular protein metabolic process,
RLK-Pelle_RLCK-VIIa-2 (from iTAK)
protein methylation,
protein refolding,
RNA_degradation
| details | | CFinderM000885 | SNF2 Transcription_Regulator(from iTAK)
valyl-tRNA aminoacylation,
Aminoacyl-tRNA_biosynthesis
valine-tRNA ligase activity,
protein binding,
aminoacyl-tRNA_editing_activity
mannosyl-oligosaccharide 1,2-alpha-mannosidase activity,
tRNA aminoacylation for protein translation,
cellulose biosynthetic process,
| details | | CFinderM001252 | SET Transcription_Regulator(from iTAK)
eukaryotic translation initiation factor 3 complex,
RNA_transport
protein binding,
| details | | CFinderM001483 | eukaryotic translation initiation factor 3 complex,
cytoplasm,
valyl-tRNA aminoacylation,
aminoacyl-tRNA_editing_activity
valine-tRNA ligase activity,
guanyl nucleotide binding,
G-protein_beta/gamma-subunit_complex_binding
G-protein coupled receptor signaling pathway,
Aminoacyl-tRNA_biosynthesis
| details | | CFinderM001585 | bZIP Transcription_Regulator(from PlantTFDB)
| details | | CFinderM001624 | nuclear pore,
ribonucleoside_binding
NAC Transcription_Regulator(from PlantTFDB)
1,3-beta-D-glucan synthase activity,
DNA-directed RNA polymerase activity,
| details | | CFinderM001712 | mitochondrial proton-transporting ATP synthase complex, catalytic core F(1),
Aminoacyl-tRNA_biosynthesis
ATP_catabolic_process
valyl-tRNA aminoacylation,
ATP biosynthetic process,
ATP metabolic process,
G-protein coupled receptor signaling pathway,
G-protein_beta/gamma-subunit_complex_binding
guanyl nucleotide binding,
valine-tRNA ligase activity,
aminoacyl-tRNA_editing_activity
proton transport,
| details | | CFinderM001733 | nucleotide-sugar transport,
carbohydrate transport,
nucleotide-sugar transmembrane transporter activity,
Golgi membrane,
sugar:hydrogen symporter activity,
metallopeptidase activity,
NAC Transcription_Regulator(from PlantTFDB)
metalloendopeptidase activity,
| details | | CFinderM001734 | NAC Transcription_Regulator(from PlantTFDB)
| details | | CFinderM001746 | cellular amino acid metabolic process,
Glycine,_serine_and_threonine_metabolism
aminoacylase activity,
Lysine_biosynthesis
Arginine_and_proline_metabolism
Cysteine_and_methionine_metabolism
metallopeptidase activity,
| details | | CFinderM001755 | STE_STE7 (from iTAK)
nucleotide-sugar transport,
S-adenosylmethionine_biosynthetic_process
carbohydrate transport,
| details | | CFinderM001871 | Steroid_biosynthesis
steroid biosynthetic process,
sterol_24-C-methyltransferase_activity
| details |
4.Expression profilings |
