CFinderADM002280's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| mevalonate pathway I | 4.33E-05 | plantCyc |
| coenzyme A metabolic process | 9.99E-05 | GO:0015936 |
| hydroxymethylglutaryl-CoA reductase (NADPH) activity | 0.000114261 | GO:0004420 |
| Protein_kinases_phosphatases, PPC:4.2.1: Calcium Dependent Protein Kinase | 0.000206007 | kinase family |
| isoprenoid biosynthetic process | 0.000945704 | GO:0008299 |
| calcium-dependent protein serine/threonine kinase activity | 0.001760194 | GO:0009931 |
| calmodulin-dependent protein kinase activity | 0.001760194 | GO:0004683 |
| Terpenoid backbone biosynthesis | 0.00180293 | KEGG pathway |
| Plant-pathogen interaction | 0.001903316 | KEGG pathway |
| exocyst | 0.002158373 | GO:0000145 |
| abscisic acid-activated signaling pathway | 0.00235521 | GO:0009738 |
| protein autophosphorylation | 0.00235521 | GO:0046777 |
| peptidyl-serine phosphorylation | 0.00235521 | GO:0018105 |
| exocytosis | 0.00235521 | GO:0006887 |
| NADP binding | 0.003057399 | GO:0050661 |
| calmodulin binding | 0.005280638 | GO:0005516 |
| intracellular signal transduction | 0.005602106 | GO:0035556 |
| protein ubiquitination | 0.009036569 | GO:0016567 |
| ubiquitin-protein transferase activity | 0.010425167 | GO:0004842 |
| calcium ion binding | 0.019278709 | GO:0005509 |
| endoplasmic reticulum membrane | 0.024701731 | GO:0005789 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T007446 | AT3G05545 (6.00E-20) | RING/U-box superfamily protein |
| CRO_T008251 | AT1G71850 (6.00E-127) | Ubiquitin carboxyl-terminal hydrolase family protein |
| CRO_T012331 | AT4G32900 (2.00E-36) | Peptidyl-tRNA hydrolase II (PTH2) family protein |
| CRO_T017896 | AT1G31130 (2.00E-103) | unknown protein |
| CRO_T018600 | AT1G76490 (2.00E-77) | HMG1|hydroxy methylglutaryl CoA reductase 1; HMGR1|3-HYDROXY-3-METHYLGLUTARYL COA REDUCTASE 1; MAD3|miRNA action deficient 3 |
| CRO_T019882 | AT2G38910 (2.00E-133) | CPK20|calcium-dependent protein kinase 20 |
| CRO_T022274 | AT1G07000 (0) | ATEXO70B2|exocyst subunit exo70 family protein B2 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM000181 | Transcription_related, Transcription regulator: mTERF heterotrimeric G-protein complex lateral root development regulation of root development reactive oxygen species metabolic process response to extracellular stimulus organ morphogenesis endoplasmic reticulum unfolded protein response fruit development defense response to fungus, incompatible interaction Cul4-RING E3 ubiquitin ligase complex metabolic process Ras signaling pathway negative regulation of abscisic acid-activated signaling pathway histone acetylation jasmonic acid biosynthesis jasmonic acid mediated signaling pathway histone acetyltransferase activity response to ethylene small GTPase mediated signal transduction protein ubiquitination endoplasmic reticulum intracellular ubiquitin-protein transferase activity Ubiquitin_Proteasome_system, E3 adaptor: DWD formation of glycosidic bonds, GlycosylTransferases: GTnc GTP binding catalytic activity | details |
| CFinderADM000454 | trans-zeatin O-beta-D-glucosyltransferase activity cis-zeatin O-beta-D-glucosyltransferase activity flavonoid metabolic process small GTPase mediated signal transduction protein ubiquitination ubiquitin-protein transferase activity formation of glycosidic bonds, GlycosylTransferases: GTnc GTP binding intracellular hydrolase activity | details |
| CFinderADM000470 | chaperone-mediated protein complex assembly regulation of mitochondrial DNA replication oxidation-dependent protein catabolic process protein demethylation misfolded or incompletely synthesized protein catabolic process production of siRNA involved in RNA interference RISC complex Cell cycle cellular response to oxidative stress RNA phosphodiester bond hydrolysis, endonucleolytic carboxylic ester hydrolase activity ribonuclease III activity ATP-dependent peptidase activity mitochondrial matrix protein ubiquitination vacuole serine-type endopeptidase activity ubiquitin-protein transferase activity sequence-specific DNA binding RNA binding | details |
| CFinderADM000547 | fatty acid beta-oxidation V (unsaturated, odd number, di-isomerase-dependent) lipid homeostasis fatty acid beta-oxidation using acyl-CoA dehydrogenase oxidoreductase activity, acting on the CH-CH group of donors, with a flavin as acceptor acyl-CoA oxidase activity acyl-CoA dehydrogenase activity fatty-acyl-CoA binding Protein_kinases_phosphatases, PPC:4.2.4: SNF1 Related Protein Kinase (SnRK) Transcription_related, Transcription regulator: mTERF Apelin signaling pathway Cell cycle Fatty acid metabolism intracellular signal transduction Peroxisome flavin adenine dinucleotide binding electron carrier activity protein phosphorylation | details |
| CFinderADM000698 | zinc ion binding | details |
| CFinderADM000808 | formation of glycosidic bonds, GlycosylTransferases: GTnc galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity system development exon-exon junction complex xylan biosynthesis translational initiation translation initiation factor activity Golgi apparatus hydrolase activity | details |
| CFinderADM000997 | Ribosome hydroxymethylglutaryl-CoA reductase (NADPH) activity ferric iron binding ferroxidase activity mevalonate pathway I structural constituent of ribosome coenzyme A metabolic process translation response to hydrogen peroxide isoprenoid biosynthetic process aerobic respiration iron-sulfur cluster assembly Porphyrin and chlorophyll metabolism Terpenoid backbone biosynthesis NADP binding rRNA binding cytosolic large ribosomal subunit endoplasmic reticulum membrane nucleotide binding | details |
| CFinderADM001094 | protein demethylation base-excision repair Base excision repair carboxylic ester hydrolase activity Cell cycle vacuole protein ubiquitination ubiquitin-protein transferase activity catalytic activity | details |
| CFinderADM001099 | Transcription_related, Transcription factor: RAV ribosomal large subunit binding nucleic acid binding nuclear exosome (RNase complex) Transcription_related, Transcription regulator: mTERF ribosome binding iron-sulfur cluster binding 3'-5' exonuclease activity RNA degradation iron-sulfur cluster assembly chloroplast organization nucleic acid phosphodiester bond hydrolysis RNA processing ATPase activity protein ubiquitination Ubiquitin_Proteasome_system, E3 adaptor: F-box ubiquitin-protein transferase activity GTP binding plasmodesma transcription factor activity, sequence-specific DNA binding iron ion binding transcription, DNA-templated chloroplast stroma | details |
| CFinderADM001547 | RNA lariat debranching enzyme activity Transcription_related, Transcription regulator: mTERF protein processing RNA phosphodiester bond hydrolysis, endonucleolytic mRNA splicing, via spliceosome small GTPase mediated signal transduction embryo development ending in seed dormancy protein ubiquitination serine-type endopeptidase activity ubiquitin-protein transferase activity GTP binding hydrolase activity | details |
| CFinderADM001703 | regulation of transcription elongation from RNA polymerase II promoter hydroxymethylglutaryl-CoA reductase (NADPH) activity coenzyme A metabolic process mevalonate pathway I positive regulation of cell proliferation heterotrimeric G-protein complex Cul3-RING ubiquitin ligase complex G-protein coupled receptor signaling pathway isoprenoid biosynthetic process signal transducer activity Terpenoid backbone biosynthesis NADP binding ubiquitin-protein transferase activity endoplasmic reticulum membrane transmembrane transport integral component of membrane | details |
| CFinderADM001738 | ferric iron transport ferric-transporting ATPase activity plastid organization translational termination translation release factor activity, codon specific ribosome binding RNA processing chloroplast stroma | details |
| CFinderADM001880 | ribosome biogenesis cell division embryo development ending in seed dormancy microtubule protein ubiquitination Ubiquitin_Proteasome_system, E3 adaptor: F-box ubiquitin-protein transferase activity GTPase activity GTP binding | details |
| CFinderADM002028 | Protein_kinases_phosphatases, PPC:4.1.3: MAP2K MAP kinase kinase activity receptor signaling protein serine/threonine kinase activity cell division MAPK cascade microtubule MAPK signaling pathway - plant embryo development ending in seed dormancy protein binding methyltransferase activity ubiquitin-protein transferase activity protein ubiquitination methylation | details |
| CFinderADM002040 | RNA lariat debranching enzyme activity exocyst mRNA splicing, via spliceosome translational initiation exocytosis RNA phosphodiester bond hydrolysis, endonucleolytic embryo development ending in seed dormancy translation initiation factor activity ubiquitin-protein transferase activity protein ubiquitination hydrolase activity | details |
| CFinderADM002068 | regulation of epidermal cell differentiation inductive cell-cell signaling regulation of trichome morphogenesis regulation of epidermal cell division floral organ morphogenesis monopolar cell growth fruit morphogenesis signal recognition particle negative regulation of nucleic acid-templated transcription glycerate dehydrogenase activity trichome branching transcription corepressor activity photorespiration SRP-dependent cotranslational protein targeting to membrane 7S RNA binding microtubule cytoskeleton organization leaf morphogenesis regulation of cell shape Cell cycle Protein export protein homodimerization activity NAD binding GTPase activity trans-Golgi network Ubiquitin_Proteasome_system, E3 adaptor: F-box GTP binding | details |
| CFinderADM002097 | cellular transition metal ion homeostasis metal ion transport exocytosis formation of glycosidic bonds, GlycosylTransferases: GTnc exocyst cytoplasm transition metal ion binding membrane phosphorylation protein kinase activity nucleotide binding hydrolase activity | details |
Expression profiles
 Show details about module gene expression profiling |