CFinderADM002071's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| lysyl-tRNA aminoacylation | 2.50E-05 | GO:0006430 |
| lysine-tRNA ligase activity | 3.37E-05 | GO:0004824 |
| ubiquitin-dependent protein catabolic process | 0.001878462 | GO:0006511 |
| small GTPase mediated signal transduction | 0.001878462 | GO:0007264 |
| Aminoacyl-tRNA biosynthesis | 0.001973295 | KEGG pathway |
| Endocytosis | 0.002378539 | KEGG pathway |
| protein ubiquitination | 0.004098255 | GO:0016567 |
| GTP binding | 0.016373613 | GO:0005525 |
| Ubiquitin_Proteasome_system, E3: RING | 0.016982357 | ubs family |
| nucleic acid binding | 0.03640698 | GO:0003676 |
| hydrolase activity | 0.03640698 | GO:0016787 |
| intracellular | 0.040508838 | GO:0005622 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T004165 | AT2G32280 (9.00E-52) | VCC|VASCULATURE COMPLEXITY AND CONNECTIVITY |
| CRO_T010338 | AT2G31680 (7.00E-98) | AtRABA5d|RAB GTPase homolog A5D |
| CRO_T018503 | AT3G11710 (1.00E-46) | ATKRS-1|lysyl-tRNA synthetase 1 |
| CRO_T022424 | AT1G68180 (6.00E-22) | RING/U-box superfamily protein |
| CRO_T026752 | AT4G24180 (4.00E-74) | TLP1|THAUMATIN-LIKE PROTEIN 1 |
| CRO_T031717 | AT3G13780 (2.00E-33) | SMAD/FHA domain-containing protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM000395 | Cytochrome_P450, Cytochrome P450: CYP716A RNA degradation plant-type cell wall organization nucleotidyltransferase activity ubiquitin-dependent protein catabolic process protein ubiquitination oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen monooxygenase activity | details |
| CFinderADM000667 | Cytochrome_P450, Cytochrome P450: CYP718A extended VTC2 cycle GDP-L-galactose biosynthesis VTC2 cycle GDP-mannose 3,5-epimerase activity (+)-abscisic acid 8'-hydroxylase activity L-ascorbate biosynthesis I (L-galactose pathway) Ascorbate and aldarate metabolism brassinosteroid biosynthetic process brassinosteroid homeostasis sterol metabolic process coenzyme binding multicellular organism development Endocytosis small GTPase mediated signal transduction protein dimerization activity GTP binding transcription factor activity, sequence-specific DNA binding iron ion binding heme binding hydrolase activity intracellular transcription, DNA-templated regulation of transcription, DNA-templated | details |
| CFinderADM001018 | pyridoxine biosynthetic process NADH metabolic process NADP metabolic process NADH repair NADPHX epimerase activity NADHX epimerase activity pyridoxamine-phosphate oxidase activity pyridoxal 5'-phosphate salvage I pyridoxal phosphate biosynthetic process Vitamin B6 metabolism aminopeptidase activity Glycosylphosphatidylinositol(GPI)-anchor biosynthesis manganese ion binding FMN binding proteolysis | details |
| CFinderADM001470 | regulation of transcription from RNA polymerase II promoter in response to salt stress pyridoxamine-phosphate oxidase activity L-iditol 2-dehydrogenase activity pyridoxal phosphate biosynthetic process cation-transporting ATPase activity cation transmembrane transport Protein_kinases_phosphatases, PPC:4.5.2: CDC2 Like Kinase Family homogalacturonan degradation protein serine/threonine kinase activity FMN binding polygalacturonase activity triacylglycerol degradation hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Transcription_related, Transcription factor: M-type metal ion transport Endocytosis Pentose and glucuronate interconversions protein phosphorylation protein serine/threonine phosphatase activity small GTPase mediated signal transduction Protein_kinases_phosphatases, PPC:1.12.4: Leucine Rich Repeat Kinase XI & XII protein dephosphorylation metal ion binding protein dimerization activity cell wall organization | details |
| CFinderADM001487 | lysyl-tRNA aminoacylation lysine-tRNA ligase activity maturation of SSU-rRNA positive regulation of flower development mRNA polyadenylation small nucleolar ribonucleoprotein complex Mpp10 complex nuclear envelope Transcription_related, Transcription factor: C3H cytoplasm viral nucleocapsid metal ion binding small-subunit processome Aminoacyl-tRNA biosynthesis mRNA surveillance pathway Ribosome biogenesis in eukaryotes RNA transport nucleic acid binding | details |
| CFinderADM001489 | L-gulonolactone oxidase activity D-arabinono-1,4-lactone oxidase activity Endocytosis small GTPase mediated signal transduction ATPase activity, coupled to transmembrane movement of substances flavin adenine dinucleotide binding GTP binding transmembrane transport hydrolase activity intracellular | details |
| CFinderADM001683 | GDP-L-fucose biosynthesis II (from L-fucose) DNA methylation on cytosine within a CHH sequence cellular response to heat GDP-L-fucose salvage fucokinase activity fucose-1-phosphate guanylyltransferase activity C-5 methylation of cytosine lysyl-tRNA aminoacylation PcG protein complex DNA (cytosine-5-)-methyltransferase activity lysine-tRNA ligase activity magnesium ion transmembrane transport magnesium ion transport Transcription_related, Transcription regulator: SET magnesium ion transmembrane transporter activity Fructose and mannose metabolism Lysine degradation Cysteine and methionine metabolism cytoplasm chromatin binding Aminoacyl-tRNA biosynthesis small GTPase mediated signal transduction Endocytosis ATP binding GTP binding phosphorylation intracellular hydrolase activity nucleic acid binding | details |
| CFinderADM001880 | ribosome biogenesis cell division embryo development ending in seed dormancy microtubule protein ubiquitination Ubiquitin_Proteasome_system, E3 adaptor: F-box ubiquitin-protein transferase activity GTPase activity GTP binding | details |
| CFinderADM001990 | DNA methylation on cytosine within a CHH sequence cellular response to heat C-5 methylation of cytosine lysyl-tRNA aminoacylation acetyl-CoA biosynthesis III (from citrate) superpathway of acetyl-CoA biosynthesis transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer lysine-tRNA ligase activity cofactor binding DNA (cytosine-5-)-methyltransferase activity Citrate cycle (TCA cycle) pyruvate kinase activity potassium ion binding Rubisco shunt glycolytic process glycolysis IV (plant cytosol) glycolysis I (from glucose 6-phosphate) chromatin binding Cysteine and methionine metabolism Aminoacyl-tRNA biosynthesis magnesium ion binding ATP binding Plant hormone signal transduction kinase activity Carbon metabolism metabolic process nucleic acid binding protein serine/threonine kinase activity protein phosphorylation | details |
| CFinderADM002104 | mannose-1-phosphate guanylyltransferase (GDP) activity racemase and epimerase activity, acting on carbohydrates and derivatives UDP-D-galacturonate biosynthesis I (from UDP-D-glucuronate) Ubiquitin_Proteasome_system, SOCS/VHL/BC-box: 3-box Hedgehog signaling pathway GDP-mannose biosynthesis Transcription_related, Transcription regulator: TRAF UDP-sugars interconversion L-ascorbate biosynthesis I (L-galactose pathway) cellulose synthase (UDP-forming) activity nucleotidyltransferase activity coenzyme binding Fructose and mannose metabolism Ubiquitin_Proteasome_system, E3 adaptor: BTB biosynthetic process cellulose biosynthetic process Amino sugar and nucleotide sugar metabolism RNA degradation integral component of membrane cell wall organization carbohydrate metabolic process | details |
| CFinderADM002119 | monopolar cell growth regulation of epidermal cell differentiation regulation of epidermal cell division inductive cell-cell signaling fruit morphogenesis floral organ morphogenesis regulation of trichome morphogenesis regulation of transcription from RNA polymerase II promoter in response to salt stress negative regulation of nucleic acid-templated transcription glycerate dehydrogenase activity trichome branching transcription corepressor activity photorespiration microtubule cytoskeleton organization leaf morphogenesis regulation of cell shape Endocytosis small GTPase mediated signal transduction protein dephosphorylation NAD binding protein homodimerization activity protein serine/threonine phosphatase activity trans-Golgi network nucleus GTP binding intracellular hydrolase activity | details |
| CFinderADM002292 | lysyl-tRNA aminoacylation lysine-tRNA ligase activity protein domain specific binding MAPK signaling pathway - yeast small GTPase mediated signal transduction Aminoacyl-tRNA biosynthesis Endocytosis GTP binding intracellular nucleic acid binding hydrolase activity | details |
Expression profiles
 Show details about module gene expression profiling |