CFinderADM002150's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Cytochrome_P450, Cytochrome P450: CYP701A | 7.01E-06 | CYP450 family |
| ent-kaur-16-en-19-ol oxidase activity | 1.29E-05 | GO:0052616 |
| ent-kaurene oxidase activity | 1.29E-05 | GO:0052615 |
| ent-kaur-16-en-19-al oxidase activity | 1.29E-05 | GO:0052617 |
| ent-kaurene oxidation to kaurenoic acid | 1.77E-05 | GO:0010241 |
| GA12 biosynthesis | 0.000120014 | plantCyc |
| gibberellin biosynthetic process | 0.000132892 | GO:0009686 |
| NOD-like receptor signaling pathway | 0.000158383 | KEGG pathway |
| Diterpenoid biosynthesis | 0.000286121 | KEGG pathway |
| chloroplast outer membrane | 0.000422348 | GO:0009707 |
| Transcription_related, Transcription factor: TCP | 0.000471181 | TF family |
| ATP-dependent peptidase activity | 0.001042439 | GO:0004176 |
| single-organism cellular process | 0.001650691 | GO:0044763 |
| cell division | 0.001650691 | GO:0051301 |
| metalloendopeptidase activity | 0.002307809 | GO:0004222 |
| defense response | 0.003213992 | GO:0006952 |
| formation of glycosidic bonds, GlycosylTransferases: GTnc | 0.016612872 | cazy family |
| endoplasmic reticulum | 0.019672292 | GO:0005783 |
| chloroplast envelope | 0.019672292 | GO:0009941 |
| proteolysis | 0.023608337 | GO:0006508 |
| iron ion binding | 0.044936137 | GO:0005506 |
| heme binding | 0.048090673 | GO:0020037 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T001528 | AT5G25900 (0) | ATKO1|ENT-KAURENE OXIDASE 1; CYP701A3|CYTOCHROME P450 701 A3; GA3|GA requiring 3 |
| CRO_T019509 | AT3G16520 (4.00E-73) | UGT88A1|UDP-glucosyl transferase 88A1 |
| CRO_T022373 | AT1G67030 (5.00E-25) | ZFP6|zinc finger protein 6 |
| CRO_T027249 | AT4G28840 (2.00E-11) | TIE1|TCP Interactor containing EAR motif protein 1 |
| CRO_T027334 | AT2G46710 (2.00E-118) | ROPGAP3|ROP guanosine triphosphatase (GTPase)-activating protein 3 |
| CRO_T032613 | AT4G18390 (1.00E-18) | TCP2|TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2 |
| CRO_T032959 | AT3G47060 (0) | ftsh7|FTSH protease 7 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM001227 | response to far red light positive regulation of circadian rhythm Circadian rhythm red, far-red light phototransduction biological regulation Protein_kinases_phosphatases, PPC:4.4.1: Unknown Function Kinase Transcription_related, Transcription factor: G2-like positive regulation of transcription, DNA-templated Transcription_related, Transcription factor: bHLH Transcription_related, Transcription factor: FAR1 transcription factor activity, sequence-specific DNA binding | details |
| CFinderADM001273 | potassium ion transmembrane transporter activity potassium ion transmembrane transport Transcription_related, Transcription factor: MYB-related Ubiquitin_Proteasome_system, E3 adaptor: F-box | details |
| CFinderADM001350 | Cytochrome_P450, Cytochrome P450: CYP701A ent-kaur-16-en-19-ol oxidase activity ent-kaurene oxidase activity ent-kaur-16-en-19-al oxidase activity ent-kaurene oxidation to kaurenoic acid GA12 biosynthesis gibberellin biosynthetic process MAPK signaling pathway Diterpenoid biosynthesis chloroplast outer membrane Protein_kinases_phosphatases, PPC:4.2.6: IRE/NPH/PI dependent/S6 Kinase response to water deprivation single-organism cellular process response to salt stress metal ion binding phosphoprotein phosphatase activity protein dephosphorylation calcium ion binding endoplasmic reticulum protein kinase activity iron ion binding heme binding nucleic acid binding protein phosphorylation | details |
| CFinderADM001700 | transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding Transcription_related, Transcription factor: NF-X1 positive regulation of long-day photoperiodism, flowering negative regulation of transcription from RNA polymerase II promoter temperature compensation of the circadian clock response to far red light response to blue light Circadian rhythm response to hydrogen peroxide Autophagy - animal Circadian rhythm - plant NOD-like receptor signaling pathway response to cold RNA polymerase II regulatory region sequence-specific DNA binding transcription from RNA polymerase II promoter nucleoplasm Protein_kinases_phosphatases, PPC:4.2.4: SNF1 Related Protein Kinase (SnRK) nucleus MAPK signaling pathway - plant defense response intracellular signal transduction Ubiquitin_Proteasome_system, E3 adaptor: DWD Ubiquitin_Proteasome_system, E3 adaptor: F-box formation of glycosidic bonds, GlycosylTransferases: GTnc | details |
| CFinderADM001824 | Transcription_related, Transcription factor: NF-X1 transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimelyl-D-alanyl-D-alanine:undecaprenyl-phosphate transferase activity phospho-N-acetylmuramoyl-pentapeptide-transferase activity 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity Peptidoglycan biosynthesis negative regulation of transcription from RNA polymerase II promoter Propanoate metabolism 2-oxoisovalerate decarboxylation to isobutanoyl-CoA RNA polymerase I activity RNA polymerase II activity NOD-like receptor signaling pathway RNA polymerase II regulatory region sequence-specific DNA binding RNA polymerase III activity DNA-directed RNA polymerase II, core complex DNA-directed RNA polymerase I complex DNA-directed RNA polymerase III complex transcription from RNA polymerase II promoter defense response Purine metabolism formation of glycosidic bonds, GlycosylTransferases: GTnc transcription, DNA-templated DNA binding | details |
| CFinderADM001948 | BRCA1-A complex BRISC complex phosphopantothenate biosynthesis I Transcription_related, Transcription factor: NF-X1 transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimelyl-D-alanyl-D-alanine:undecaprenyl-phosphate transferase activity pantothenate kinase activity phospho-N-acetylmuramoyl-pentapeptide-transferase activity Peptidoglycan biosynthesis positive regulation of DNA repair negative regulation of transcription from RNA polymerase II promoter coenzyme A biosynthetic process Pantothenate and CoA biosynthesis NOD-like receptor signaling pathway RNA polymerase II regulatory region sequence-specific DNA binding Protein_kinases_phosphatases, PPC:4.2.4: SNF1 Related Protein Kinase (SnRK) transcription from RNA polymerase II promoter single-organism cellular process Homologous recombination nucleus MAPK signaling pathway - plant defense response intracellular signal transduction formation of glycosidic bonds, GlycosylTransferases: GTnc ATP binding phosphorylation | details |
| CFinderADM001961 | maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) ribosomal large subunit assembly cell division ATP-dependent peptidase activity metalloendopeptidase activity unfolded protein binding rRNA binding protein folding nucleolus chloroplast envelope proteolysis mitochondrion | details |
| CFinderADM002065 | protein targeting to membrane plasmodesma regulation of shoot system development vesicle docking cell differentiation SNARE interactions in vesicular transport Protein_kinases_phosphatases, PPC:4.2.1: Calcium Dependent Protein Kinase vesicle fusion calcium-dependent protein serine/threonine kinase activity signal transducer activity calmodulin-dependent protein kinase activity SNARE binding SNAP receptor activity peptidyl-serine phosphorylation protein autophosphorylation abscisic acid-activated signaling pathway SNARE complex plasma membrane Transcription_related, Transcription factor: ERF Transcription_related, Transcription factor: GRAS calmodulin binding defense response signal transduction intracellular signal transduction anchored component of plasma membrane integral component of membrane nucleus Plant hormone signal transduction endoplasmic reticulum calcium ion binding sequence-specific DNA binding transcription factor activity, sequence-specific DNA binding | details |
| CFinderADM002208 | Transcription_related, Transcription factor: NF-X1 limit dextrinase activity pullulanase activity transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding formation of glycosidic bonds, GlycosylTransferases: GTnc negative regulation of transcription from RNA polymerase II promoter starch catabolic process hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc RNA polymerase II activity RNA polymerase I activity NOD-like receptor signaling pathway RNA polymerase II regulatory region sequence-specific DNA binding substrate-specific transmembrane transporter activity RNA polymerase III activity DNA-directed RNA polymerase II, core complex DNA-directed RNA polymerase I complex DNA-directed RNA polymerase III complex starch biosynthetic process transcription from RNA polymerase II promoter defense response Purine metabolism chloroplast stroma transmembrane transport transcription, DNA-templated | details |
Expression profiles
 Show details about module gene expression profiling |