TissueCFM000207's detailed annotation
|
Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| costunolide biosynthesis | 0.005847606 | plantCyc |
| Cytochrome_P450, Cytochrome P450: CYP71B | 0.01168571 | CYP450 family |
| benzoate biosynthesis I (CoA-dependent, β-oxidative) | 0.016681209 | plantCyc |
| Transcription_related, Transcription factor: bHLH | 0.021418771 | TF family |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T003357 | AT5G10570 (1.00E-24) | basic helix-loop-helix (bHLH) DNA-binding superfamily protein |
| CRO_T007008 | AT3G25882 (4.00E-06) | NIMIN-2|NIM1-interacting 2 |
| CRO_T009071 | AT5G06570 (1.00E-88) | alpha/beta-Hydrolases superfamily protein |
| CRO_T012126 | AT1G07090 (6.00E-54) | LSH6|LIGHT SENSITIVE HYPOCOTYLS 6 |
| CRO_T024635 | AT5G25130 (8.00E-102) | CYP71B12|cytochrome P450, family 71, subfamily B, polypeptide 12 |
| CRO_T029077 | AT3G56891 (4.00E-18) | Heavy metal transport/detoxification superfamily protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000019 | Transcription_related, Transcription factor: bHLH | details |
| TissueCFM000022 | details | |
| TissueCFM000071 | UDP-D-apiose biosynthesis (from UDP-D-glucuronate) UDP-D-xylose biosynthesis UDP-sugars interconversion UDP-glucuronate decarboxylase activity | details |
| TissueCFM000072 | details | |
| TissueCFM000114 | ent-kaurene biosynthesis I Diterpenoid biosynthesis terpene synthase activity Transcription_related, Transcription factor: bHLH | details |
| TissueCFM000115 | ent-kaurene biosynthesis I multi-organism process metabolic process arginine biosynthetic process 2-Oxocarboxylic acid metabolism Diterpenoid biosynthesis root development Transcription_related, Transcription factor: bHLH terpene synthase activity N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity | details |
| TissueCFM000127 | Transcription_related, Transcription factor: BBR-BPC integral component of lumenal side of endoplasmic reticulum membrane Golgi-associated vesicle membrane integral component of cytoplasmic side of endoplasmic reticulum membrane lysosomal membrane ribonucleoside-diphosphate reductase complex membrane protein proteolysis signal peptide processing pollen germination deoxyribonucleotide biosynthetic process aspartic endopeptidase activity, intramembrane cleaving ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor | details |
| TissueCFM000142 | Fatty acid metabolism regulation of biological process response to bacterium fatty acid β-oxidation II (peroxisome) unsaturated, even numbered fatty acid β-oxidation very long chain fatty acid biosynthesis II Transcription_related, Transcription factor: bHLH Transcription_related, Transcription factor: HB | details |
| TissueCFM000151 | Fatty acid metabolism | details |
| TissueCFM000159 | Cytochrome_P450, Cytochrome P450: CYP83B 4-hydroxy-tetrahydrodipicolinate synthase L-lysine biosynthesis VI salvigenin biosynthesis diaminopimelate biosynthetic process lysine biosynthetic process via diaminopimelate | details |
| TissueCFM000163 | Cytochrome_P450, Cytochrome P450: CYP81K | details |
| TissueCFM000171 | oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor Transcription_related, Transcription factor: bHLH MAPK signaling pathway - plant | details |
| TissueCFM000180 | response to manganese ion response to copper ion manganese:proton antiporter activity late endosome response to zinc ion cellular manganese ion homeostasis manganese ion transmembrane transport regulation of sequestering of zinc ion anion transmembrane transport zinc II ion transmembrane transport Transcription_related, Transcription factor: bHLH zinc ion transmembrane transporter activity | details |
| TissueCFM000215 | Ubiquitin_Proteasome_system, DUB: ULP Transcription_related, Transcription factor: bHLH | details |
| TissueCFM000232 | Transcription_related, Transcription factor: bHLH | details |
| TissueCFM000280 | ent-kaurene biosynthesis I Diterpenoid biosynthesis terpene synthase activity Transcription_related, Transcription factor: bHLH | details |
| TissueCFM000299 | Transcription_related, Transcription factor: bHLH | details |
| TissueCFM000328 | ajmaline and sarpagine biosynthesis Indole alkaloid biosynthesis methyl salicylate esterase activity guiding stereospecific synthesis activity dimethylallyltranstransferase activity lipase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: bHLH isoprenoid biosynthetic process phenylpropanoid biosynthetic process systemic acquired resistance, salicylic acid mediated signaling pathway regulation of catalytic activity peptidase activity | details |
| TissueCFM000432 | response to biotic stimulus defense response benzoate biosynthesis I (CoA-dependent, β-oxidative) Transcription_related, Transcription factor: MYB-related Transcription_related, Transcription factor: bHLH | details |
| TissueCFM000454 | ent-kaurene biosynthesis I Diterpenoid biosynthesis terpene synthase activity Transcription_related, Transcription factor: bHLH | details |
| TissueCFM000521 | ent-kaurene biosynthesis I Diterpenoid biosynthesis terpene synthase activity Transcription_related, Transcription factor: bHLH | details |
| TissueCFM000670 | Transcription_related, Transcription factor: bHLH | details |
| TissueCFM000671 | Transcription_related, Transcription factor: bHLH | details |
| TissueCFM000682 | Transcription_related, Transcription factor: bHLH aspartyl esterase activity pectinesterase activity pectinesterase inhibitor activity negative regulation of catalytic activity pectin catabolic process cell wall modification Pentose and glucuronate interconversions cell wall | details |
| TissueCFM000781 | Transcription_related, Transcription factor: bHLH Transcription_related, Transcription factor: ERF | details |
| TissueCFM000835 | Transcription_related, Transcription factor: bHLH | details |
| TissueCFM000875 | Transcription_related, Transcription factor: bHLH aspartyl esterase activity pectinesterase activity pectinesterase inhibitor activity negative regulation of catalytic activity pectin catabolic process cell wall modification Pentose and glucuronate interconversions cell wall | details |
| TissueCFM000898 | manganese:proton antiporter activity response to copper ion response to manganese ion Cell cycle manganese ion transmembrane transport cellular manganese ion homeostasis mitotic sister chromatid cohesion response to zinc ion regulation of sequestering of zinc ion late endosome cohesin core heterodimer phenylpropanoid biosynthetic process Transcription_related, Transcription factor: bHLH zinc II ion transmembrane transport guiding stereospecific synthesis activity zinc ion transmembrane transporter activity chromatin binding regulation of catalytic activity DNA repair | details |
| TissueCFM000904 | Transcription_related, Transcription factor: bHLH Transcription_related, Transcription factor: MYB | details |
| TissueCFM000972 | Transcription_related, Transcription factor: bHLH | details |
| TissueCFM000977 | Cytochrome_P450, Cytochrome P450: CYP722A brassinosteroid homeostasis brassinosteroid biosynthetic process sterol metabolic process multicellular organism development Transcription_related, Transcription factor: bHLH | details |
| TissueCFM001174 | Transcription_related, Transcription factor: bHLH Cytochrome_P450, Cytochrome P450: CYP735A trans-zeatin biosynthesis Zeatin biosynthesis anion transmembrane transport potassium ion transmembrane transport secologanin synthase activity potassium ion transmembrane transporter activity | details |
| TissueCFM001197 | Stilbenoid, diarylheptanoid and gingerol biosynthesis D-arabinono-1,4-lactone oxidase activity L-gulonolactone oxidase activity aromatic compound biosynthetic process fatty acid metabolic process Transcription_related, Transcription factor: bHLH O-methyltransferase activity S-adenosylmethionine-dependent methyltransferase activity flavin adenine dinucleotide binding | details |
Expression profiles
 Show details about module gene expression profiling |