TissueCFM000270's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| farnesylcysteine salvage pathway | 0.014198307 | plantCyc |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000168 | AT3G47580 (2.00E-43) | Leucine-rich repeat protein kinase family protein |
| CRO_T000276 | - | - |
| CRO_T000347 | AT5G10010 (8.00E-94) | HIT4|HEAT INTOLERANT 4 |
| CRO_T001132 | - | - |
| CRO_T001715 | AT3G26350 (8.00E-33) | LOCATED IN: chloroplast |
| CRO_T003380 | - | - |
| CRO_T004571 | - | - |
| CRO_T005426 | AT3G06610 (6.00E-40) | DNA-binding enhancer protein-related |
| CRO_T005813 | AT2G29130 (0) | LAC2|laccase 2 |
| CRO_T006795 | - | - |
| CRO_T006948 | - | - |
| CRO_T007420 | AT5G39590 (2.00E-165) | TLD-domain containing nucleolar protein |
| CRO_T007616 | - | - |
| CRO_T010291 | AT5G58560 (1.00E-82) | FOLK|farnesol kinase |
| CRO_T010493 | - | - |
| CRO_T010752 | - | - |
| CRO_T012305 | - | - |
| CRO_T012510 | AT3G62420 (1.00E-21) | ATBZIP53|basic region/leucine zipper motif 53 |
| CRO_T013502 | AT5G65660 (2.00E-32) | hydroxyproline-rich glycoprotein family protein |
| CRO_T013646 | - | - |
| CRO_T014231 | AT1G70940 (0) | ATPIN3|ARABIDOPSIS PIN-FORMED 3; PIN3|PIN-FORMED 3 |
| CRO_T015660 | - | - |
| CRO_T015858 | - | - |
| CRO_T016906 | AT5G20510 (6.00E-88) | AL5|alfin-like 5 |
| CRO_T016922 | - | - |
| CRO_T017475 | AT1G52150 (0) | CNA|CORONA; ICU4|INCURVATA 4 |
| CRO_T018357 | - | - |
| CRO_T019868 | - | - |
| CRO_T020611 | ATMG00285 (7.00E-16) | NAD2|NADH DEHYDROGENASE 2; NAD2.1|NADH DEHYDROGENASE 2.1; NAD2A|NADH dehydrogenase 2A |
| CRO_T021089 | - | - |
| CRO_T021459 | - | - |
| CRO_T021569 | - | - |
| CRO_T022154 | AT1G07090 (4.00E-65) | LSH6|LIGHT SENSITIVE HYPOCOTYLS 6 |
| CRO_T022432 | - | - |
| CRO_T023005 | - | - |
| CRO_T024201 | - | - |
| CRO_T024543 | - | - |
| CRO_T024657 | - | - |
| CRO_T026007 | AT5G02390 (1.00E-06) | DAU1|DUO1-activated unknown 1; TRM16|TON1 Recruiting Motif 16 |
| CRO_T028190 | AT3G21460 (6.00E-26) | Glutaredoxin family protein |
| CRO_T029319 | AT3G24550 (4.00E-63) | ATPERK1|proline-rich extensin-like receptor kinase 1 |
| CRO_T029399 | AT1G06150 (2.00E-92) | EMB1444|EMBRYO DEFECTIVE 1444 |
| CRO_T032235 | AT3G47110 (1.00E-116) | Leucine-rich repeat protein kinase family protein |
| CRO_T033459 | - | - |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000004 | details | |
| TissueCFM000005 | geraniol kinase activity CTP:2-trans,-6-trans-farnesol kinase activity geranylgeraniol kinase activity anthranilate synthase complex farnesylcysteine salvage pathway L-tryptophan biosynthesis anthranilate synthase activity | details |
| TissueCFM000017 | Transcription_related, Transcription factor: Alfin-like histone binding unfolded protein binding | details |
| TissueCFM000029 | details | |
| TissueCFM000036 | details | |
| TissueCFM000040 | Transcription_related, Transcription factor: Alfin-like | details |
| TissueCFM000060 | 4-aminobutanoate degradation I 4-aminobutanoate degradation IV L-glutamate degradation IV protein complex spliceosomal complex | details |
| TissueCFM000119 | details | |
| TissueCFM000135 | L-aspartate biosynthesis L-aspartate degradation I superpathway of L-isoleucine biosynthesis I superpathway of L-threonine biosynthesis superpathway of aspartate and asparagine biosynthesis chromatin organization cell morphogenesis transport transporter activity cellular amino acid metabolic process L-aspartate:2-oxoglutarate aminotransferase activity L-phenylalanine:2-oxoglutarate aminotransferase activity | details |
| TissueCFM000143 | adenine and adenosine salvage II | details |
| TissueCFM000182 | Transcription_related, Transcription factor: Alfin-like Aminoacyl-tRNA biosynthesis | details |
| TissueCFM000193 | Transcription_related, Transcription factor: Alfin-like histone binding RNA transport translational initiation | details |
| TissueCFM000203 | L-threonine biosynthesis threonine metabolic process L-methionine biosynthesis II homoserine kinase activity Protein_kinases_phosphatases, PPC:1.17.1: Wall Associated Kinase | details |
| TissueCFM000206 | Transcription_related, Transcription factor: Alfin-like formation of glycosidic bonds, GlycosylTransferases: GTnc histone binding | details |
| TissueCFM000210 | Cytochrome_P450, Cytochrome P450: CYP96A farnesylcysteine salvage pathway geraniol kinase activity geranylgeraniol kinase activity CTP:2-trans,-6-trans-farnesol kinase activity anthranilate synthase complex L-tryptophan biosynthesis | details |
| TissueCFM000218 | Transcription_related, Transcription factor: Alfin-like PI3K-Akt signaling pathway histone binding | details |
| TissueCFM000222 | details | |
| TissueCFM000250 | details | |
| TissueCFM000318 | Transcription_related, Transcription factor: Alfin-like histone binding | details |
| TissueCFM000319 | Protein_kinases_phosphatases, PPC:4.2.2: Phosphoenolpyruvate Carboxylase Kinase Transcription_related, Transcription factor: Alfin-like calcium-dependent protein serine/threonine kinase activity histone binding calmodulin-dependent protein kinase activity peptidyl-serine phosphorylation protein autophosphorylation abscisic acid-activated signaling pathway calmodulin binding intracellular signal transduction | details |
| TissueCFM000337 | Transcription_related, Transcription factor: Alfin-like Phenylpropanoid biosynthesis oxidoreductase activity histone binding | details |
| TissueCFM000342 | Transcription_related, Transcription factor: Alfin-like | details |
| TissueCFM000381 | Transcription_related, Transcription factor: C2H2 regulation of abscisic acid-activated signaling pathway maintenance of seed dormancy oligopeptide transport abscisic acid binding transcription regulatory region DNA binding | details |
| TissueCFM000517 | Transcription_related, Transcription factor: Alfin-like histone binding | details |
| TissueCFM000552 | Transcription_related, Transcription factor: Alfin-like Regulation of actin cytoskeleton cellular component organization histone binding single-organism cellular process | details |
| TissueCFM000584 | Transcription_related, Transcription factor: Alfin-like photosystem II reaction center histone binding photosynthesis, light reaction | details |
| TissueCFM000585 | Transcription_related, Transcription factor: Alfin-like photosystem II reaction center histone binding photosynthesis, light reaction | details |
| TissueCFM000602 | Protein_kinases_phosphatases, PPC:4.2.2: Phosphoenolpyruvate Carboxylase Kinase Transcription_related, Transcription factor: Alfin-like calcium-dependent protein serine/threonine kinase activity histone binding calmodulin-dependent protein kinase activity peptidyl-serine phosphorylation protein autophosphorylation abscisic acid-activated signaling pathway calmodulin binding intracellular signal transduction | details |
| TissueCFM000620 | Transcription_related, Transcription factor: Alfin-like Transcription_related, Transcription factor: PLATZ regulation of embryonic development glycyl-tRNA aminoacylation mitochondrial electron transport, ubiquinol to cytochrome c | details |
| TissueCFM000625 | post-embryonic root development MAPK signaling pathway - yeast protein domain specific binding calcium ion binding | details |
| TissueCFM000668 | quercetin 7-O-glucosyltransferase activity quercetin 3-O-glucosyltransferase activity flavonoid biosynthetic process flavonoid glucuronidation intracellular membrane-bounded organelle formation of glycosidic bonds, GlycosylTransferases: GTnc | details |
| TissueCFM000771 | Transcription_related, Transcription factor: Alfin-like post-embryonic root development MAPK signaling pathway - yeast PI3K-Akt signaling pathway Transcription_related, Transcription factor: M-type | details |
| TissueCFM001084 | Transcription_related, Transcription factor: Alfin-like histone binding | details |
| TissueCFM001277 | Transcription_related, Transcription factor: Alfin-like histone binding | details |
Expression profiles
 Show details about module gene expression profiling |