TissueCFM000322's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| DNA catabolic process, endonucleolytic | 0.002481903 | GO:0000737 |
| protein phosphorylation | 0.006663643 | GO:0006468 |
| Fanconi anemia pathway | 0.014759188 | KEGG pathway |
| Glycosylphosphatidylinositol(GPI)-anchor biosynthesis | 0.014759188 | KEGG pathway |
| myosin heavy chain kinase activity | 0.018883339 | GO:0016905 |
| chromosome | 0.030650981 | GO:0005694 |
| Ribosome biogenesis in eukaryotes | 0.031999706 | KEGG pathway |
| Ubiquitin_Proteasome_system, E3 adaptor: DWD | 0.041052335 | ubs family |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000398 | AT3G03305 (0) | Calcineurin-like metallo-phosphoesterase superfamily protein |
| CRO_T002911 | AT2G36410 (1.00E-53) | Family of unknown function (DUF662) |
| CRO_T009000 | AT1G12730 (2.00E-31) | GPI transamidase subunit PIG-U |
| CRO_T016013 | AT3G05090 (0) | LRS1|LATERAL ROOT STIMULATOR 1 |
| CRO_T025703 | AT2G24990 (2.00E-86) | Serine/threonine-protein kinase Rio1 |
| CRO_T026309 | AT2G29760 (3.00E-115) | OTP81|ORGANELLE TRANSCRIPT PROCESSING 81 |
| CRO_T030113 | - | - |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000286 | cleavage in ITS2 between 5.8S rRNA and LSU-rRNA of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) Fanconi anemia pathway detoxification of reactive carbonyls in chloroplasts polynucleotide 5'-hydroxyl-kinase activity myosin heavy chain kinase activity Ubiquitin_Proteasome_system, E3 adaptor: DWD | details |
| TissueCFM000530 | transcription initiation from RNA polymerase III promoter cell wall organization or biogenesis O-acetyltransferase activity RNA polymerase III activity DNA-directed RNA polymerase III complex Purine metabolism | details |
| TissueCFM000769 | histone-arginine N-methyltransferase activity histone arginine methylation [myelin basic protein]-arginine N-methyltransferase activity protein-arginine omega-N monomethyltransferase activity positive regulation of vernalization response peptidyl-arginine methylation, to symmetrical-dimethyl arginine Pentose phosphate pathway protein-arginine omega-N asymmetric methyltransferase activity ribokinase activity peptidyl-arginine methylation, to asymmetrical-dimethyl arginine response to high light intensity response to hydrogen peroxide D-ribose metabolic process protein N-linked glycosylation FoxO signaling pathway regulation of flower development base-excision repair carbohydrate phosphorylation vegetative to reproductive phase transition of meristem DNA recombination | details |
| TissueCFM001229 | Ubiquitin_Proteasome_system, E1: ThiF Pentose phosphate pathway S-methyl-5-thio-α-D-ribose 1-phosphate degradation L-leucine biosynthesis L-leucine degradation I Renin-angiotensin system protein neddylation D-ribose metabolic process ribokinase activity dipeptidyl-peptidase activity acid-amino acid ligase activity NEDD8 activating enzyme activity ribosomal large subunit binding base-excision repair carbohydrate phosphorylation Base excision repair ribosome binding ATP binding serine-type carboxypeptidase activity | details |
| TissueCFM001607 | details |
Expression profiles
 Show details about module gene expression profiling |