TissueCFM000769's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| histone-arginine N-methyltransferase activity | 0.000172032 | GO:0008469 |
| histone arginine methylation | 0.000174001 | GO:0034969 |
| [myelin basic protein]-arginine N-methyltransferase activity | 0.007851601 | GO:0016277 |
| protein-arginine omega-N monomethyltransferase activity | 0.007851601 | GO:0035241 |
| positive regulation of vernalization response | 0.017007322 | GO:0010220 |
| peptidyl-arginine methylation, to symmetrical-dimethyl arginine | 0.017007322 | GO:0019918 |
| Pentose phosphate pathway | 0.018053776 | KEGG pathway |
| protein-arginine omega-N asymmetric methyltransferase activity | 0.021175218 | GO:0035242 |
| ribokinase activity | 0.021175218 | GO:0004747 |
| peptidyl-arginine methylation, to asymmetrical-dimethyl arginine | 0.025498547 | GO:0019919 |
| response to high light intensity | 0.025498547 | GO:0009644 |
| response to hydrogen peroxide | 0.03639691 | GO:0042542 |
| D-ribose metabolic process | 0.03639691 | GO:0006014 |
| protein N-linked glycosylation | 0.038204338 | GO:0006487 |
| FoxO signaling pathway | 0.04057481 | KEGG pathway |
| regulation of flower development | 0.0480701 | GO:0009909 |
| base-excision repair | 0.04855266 | GO:0006284 |
| carbohydrate phosphorylation | 0.04855266 | GO:0046835 |
| vegetative to reproductive phase transition of meristem | 0.048876593 | GO:0010228 |
| DNA recombination | 0.048876593 | GO:0006310 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T007218 | AT1G04870 (1.00E-05) | PRMT10|protein arginine methyltransferase 10 |
| CRO_T008934 | AT1G06330 (0.0000009) | Heavy metal transport/detoxification superfamily protein |
| CRO_T011820 | AT3G06930 (5.00E-50) | ATPRMT4B|PROTEIN ARGININE METHYLTRANSFERASE 4B |
| CRO_T016204 | AT2G06510 (0) | ATRPA1A|REPLICATION PROTEIN A 1A; ATRPA70A|RPA70-KDA SUBUNIT A |
| CRO_T022003 | AT1G17160 (1.00E-121) | pfkB-like carbohydrate kinase family protein |
| CRO_T022306 | AT4G27670 (6.00E-15) | HSP21|heat shock protein 21 |
| CRO_T023677 | AT1G26330 (6.00E-46) | DNA binding |
| CRO_T025703 | AT2G24990 (2.00E-86) | Serine/threonine-protein kinase Rio1 |
| CRO_T027212 | AT5G37370 (1.00E-46) | ATSRL1|PRP38 family protein |
| CRO_T027408 | AT4G21150 (1.00E-174) | HAP6|HAPLESS 6; RPN2|RIBOPHORIN II |
| CRO_T028440 | AT2G36490 (2.00E-14) | DML1|demeter-like 1; ROS1|REPRESSOR OF SILENCING1 |
| CRO_T029811 | AT4G21705 (2.00E-130) | Tetratricopeptide repeat (TPR)-like superfamily protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000322 | DNA catabolic process, endonucleolytic protein phosphorylation Fanconi anemia pathway Glycosylphosphatidylinositol(GPI)-anchor biosynthesis myosin heavy chain kinase activity chromosome Ribosome biogenesis in eukaryotes Ubiquitin_Proteasome_system, E3 adaptor: DWD | details |
| TissueCFM000616 | tryptophan synthase activity oxidation-reduction process tryptophan biosynthetic process ethylene biosynthesis I (plants) L-tryptophan biosynthesis flavonoid biosynthesis (in equisetum) pyridoxal phosphate binding Phenylpropanoid biosynthesis | details |
| TissueCFM000724 | L-histidine biosynthesis Protein_kinases_phosphatases, PPC:4.2.1: Calcium Dependent Protein Kinase L-glutamate import response to high light intensity L-lysine transmembrane transport L-arginine import L-glutamate transmembrane transport cellular nitrogen compound metabolic process histidine biosynthetic process gene expression response to hydrogen peroxide regulation of signal transduction L-glutamate transmembrane transporter activity histidinol-phosphate transaminase activity L-lysine transmembrane transporter activity cellular macromolecule metabolic process cation binding L-phenylalanine:2-oxoglutarate aminotransferase activity | details |
| TissueCFM000764 | base-excision repair response to salt stress Base excision repair precatalytic spliceosome catalytic activity Spliceosome | details |
| TissueCFM000813 | Ribosome 5S rRNA binding rRNA primary transcript binding gene expression cellular nitrogen compound metabolic process response to high light intensity regulation of signal transduction maturation of 5.8S rRNA response to hydrogen peroxide maturation of LSU-rRNA cellular macromolecule metabolic process response to heat ribosomal large subunit assembly primary metabolic process preribosome, large subunit precursor | details |
| TissueCFM000928 | molybdenum ion binding pyridoxal phosphate binding protein N-linked glycosylation sucrose metabolic process catalytic activity sucrose-phosphate synthase activity formation of glycosidic bonds, GlycosylTransferases: GTnc Transcription_related, Transcription factor: G2-like sucrose synthase activity oligosaccharyltransferase complex sucrose biosynthesis I (from photosynthesis) sucrose biosynthesis II N-Glycan biosynthesis Starch and sucrose metabolism | details |
| TissueCFM001229 | Ubiquitin_Proteasome_system, E1: ThiF Pentose phosphate pathway S-methyl-5-thio-α-D-ribose 1-phosphate degradation L-leucine biosynthesis L-leucine degradation I Renin-angiotensin system protein neddylation D-ribose metabolic process ribokinase activity dipeptidyl-peptidase activity acid-amino acid ligase activity NEDD8 activating enzyme activity ribosomal large subunit binding base-excision repair carbohydrate phosphorylation Base excision repair ribosome binding ATP binding serine-type carboxypeptidase activity | details |
| TissueCFM001426 | formation of glycosidic bonds, GlycosylTransferases: GTnc acylglycerol lipase activity phospholipase activity pheophorbide a oxygenase activity sucrose-phosphate synthase activity chlorophyllide a oxygenase [overall] activity RNA polymerase I transcription factor complex sucrose synthase activity cell death protein N-linked glycosylation fruit development sucrose metabolic process defense response to bacterium, incompatible interaction chlorophyll catabolic process oligosaccharyltransferase complex chlorophyll a degradation II phospholipid remodeling (phosphatidylcholine, yeast) sucrose biosynthesis I (from photosynthesis) sucrose biosynthesis II phosphatidylcholine acyl editing phospholipases flower development lipid catabolic process N-Glycan biosynthesis Porphyrin and chlorophyll metabolism 2 iron, 2 sulfur cluster binding | details |
| TissueCFM001492 | [myelin basic protein]-arginine N-methyltransferase activity 3'-5'-exodeoxyribonuclease activity protein-arginine omega-N monomethyltransferase activity nucleotide-excision repair, DNA gap filling DNA replication proofreading base-excision repair, gap-filling delta DNA polymerase complex oligosaccharyltransferase complex protein-arginine omega-N asymmetric methyltransferase activity histone-arginine N-methyltransferase activity peptidyl-arginine methylation, to asymmetrical-dimethyl arginine histone arginine methylation FoxO signaling pathway protein N-linked glycosylation DNA-directed DNA polymerase activity DNA binding DNA recombination DNA biosynthetic process vegetative to reproductive phase transition of meristem DNA replication N-Glycan biosynthesis DNA repair nucleic acid phosphodiester bond hydrolysis | details |
| TissueCFM001535 | oligosaccharyltransferase complex Cytochrome_P450, Cytochrome P450: CYP88A Transcription_related, Transcription factor: G2-like branched-chain amino acid biosynthetic process protein N-linked glycosylation 2-Oxocarboxylic acid metabolism Diterpenoid biosynthesis N-Glycan biosynthesis ethylene biosynthesis I (plants) flavonoid biosynthesis (in equisetum) flavonol biosynthesis GA12 biosynthesis L-valine biosynthesis syringetin biosynthesis tRNA modification negative regulation of catalytic activity acetolactate synthase activity | details |
| TissueCFM001565 | GDP-mannose biosynthesis L-ascorbate biosynthesis I (L-galactose pathway) Legionellosis nucleocytoplasmic transport response to endoplasmic reticulum stress glutathione transferase activity Ran GTPase binding protein serine/threonine phosphatase activity nucleotidyltransferase activity protein transporter activity translation elongation factor activity protein disulfide isomerase activity Fructose and mannose metabolism | details |
| TissueCFM001653 | Biosynthesis of amino acids L-histidine biosynthesis histidinol-phosphate transaminase activity argininosuccinate synthase activity response to high light intensity argininosuccinate metabolic process response to hydrogen peroxide histidine biosynthetic process urea cycle L-phenylalanine:2-oxoglutarate aminotransferase activity arginine biosynthetic process response to heat chloroplast precatalytic spliceosome response to salt stress | details |
| TissueCFM001655 | cell-cell signaling argininosuccinate metabolic process production of siRNA involved in chromatin silencing by small RNA long-distance posttranscriptional gene silencing response to high light intensity urea cycle production of siRNA involved in RNA interference response to hydrogen peroxide transcription, RNA-templated arginine biosynthetic process argininosuccinate synthase activity defense response to fungus response to heat ribosome biogenesis RNA-directed RNA polymerase activity DNA-directed RNA polymerase III complex mitochondrion RNA polymerase III activity | details |
| TissueCFM001741 | DNA replication proofreading nucleotide-excision repair, DNA gap filling base-excision repair, gap-filling response to high light intensity 3'-5'-exodeoxyribonuclease activity delta DNA polymerase complex oligosaccharyltransferase complex protein N-linked glycosylation response to hydrogen peroxide 5S rRNA binding response to heat DNA biosynthetic process DNA-directed DNA polymerase activity nucleic acid phosphodiester bond hydrolysis | details |
Expression profiles
 Show details about module gene expression profiling |