TissueCFM000357's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| transcription from RNA polymerase I promoter | 0.001861152 | GO:0006360 |
| ncRNA processing | 0.001861152 | GO:0034470 |
| RNA polymerase I activity | 0.005847606 | GO:0001054 |
| DNA-directed RNA polymerase I complex | 0.005847606 | GO:0005736 |
| Ubiquitin_Proteasome_system, E3 adaptor: DWD | 0.035293061 | ubs family |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000254 | AT4G14990 (9.00E-157) | Topoisomerase II-associated protein PAT1 |
| CRO_T002339 | AT4G07990 (3.00E-41) | Chaperone DnaJ-domain superfamily protein |
| CRO_T007418 | AT1G75670 (7.00E-23) | DNA-directed RNA polymerases |
| CRO_T026911 | AT3G63460 (0) | SEC31B|transducin family protein / WD-40 repeat family protein |
| CRO_T032358 | AT1G34770 (2.00E-27) | |
| CRO_T033552 | AT2G47300 (6.00E-88) | POP1|similar to yeast POP1 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000052 | biotin biosynthesis from 8-amino-7-oxononanoate I methionyl-tRNA aminoacylation biotin biosynthetic process Biotin metabolism Selenocompound metabolism biotin synthase activity methionine-tRNA ligase activity tRNA binding RNA degradation | details |
| TissueCFM000152 | histone exchange regulation of developmental growth regulation of histone deacetylation Notch signaling pathway tryptophanyl-tRNA aminoacylation Swr1 complex proton-transporting two-sector ATPase complex, catalytic domain Golgi-associated vesicle hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Protein_kinases_phosphatases, PPC:1.11.1: Legume Lectin Domain Kinase | details |
| TissueCFM000177 | histone exchange regulation of developmental growth regulation of histone deacetylation proton-transporting two-sector ATPase complex, catalytic domain Swr1 complex ATPase activity, coupled to transmembrane movement of ions, rotational mechanism histone deacetylase binding nucleosome binding U5 snRNP U4/U6 x U5 tri-snRNP complex cation-transporting ATPase activity ATP biosynthetic process spliceosomal complex assembly regulation of flower development spliceosomal complex hydrogen ion transmembrane transporter activity defense response to bacterium intracellular part identical protein binding hydrogen ion transmembrane transport Ubiquitin_Proteasome_system, E3 adaptor: DWD | details |
| TissueCFM000209 | biotin biosynthesis from 8-amino-7-oxononanoate I | details |
| TissueCFM000288 | protein localization to cell surface attachment of GPI anchor to protein GPI-anchor transamidase complex GPI-anchor transamidase activity Glycosylphosphatidylinositol(GPI)-anchor biosynthesis RNA degradation peptidase activity | details |
| TissueCFM000294 | details | |
| TissueCFM000428 | oxidation-reduction process malate metabolic process gluconeogenesis I malate dehydrogenase (decarboxylating) (NAD+) activity FAD binding cobalt ion binding secondary metabolite biosynthetic process Ubiquitin_Proteasome_system, E3 adaptor: DWD | details |
| TissueCFM000557 | regulation of transcription elongation from RNA polymerase II promoter positive regulation of cell proliferation Herpes simplex infection Ubiquitin_Proteasome_system, E3 adaptor: DWD RNA binding | details |
| TissueCFM000698 | regulation of gene expression by genetic imprinting regulation of endosperm development cell projection morphogenesis polar nucleus chromatin silencing complex histone methylation translational elongation translation elongation factor activity Ubiquitin_Proteasome_system, E3 adaptor: DWD RNA degradation RNA transport | details |
| TissueCFM000699 | pantoate-beta-alanine ligase activity phosphopantothenate biosynthesis I beta-Alanine metabolism pantothenate biosynthetic process proton-transporting ATP synthase complex assembly regulation of endosperm development regulation of gene expression by genetic imprinting histone methylation chromatin silencing complex polar nucleus RNA degradation Ubiquitin_Proteasome_system, E3 adaptor: DWD | details |
| TissueCFM000789 | PRPP biosynthesis I plasmodesma cytosol cytoplasmic mRNA processing body plasma membrane sugar mediated signaling pathway nucleotide biosynthetic process nucleoside metabolic process long-day photoperiodism nuclear-transcribed mRNA catabolic process, nonsense-mediated decay response to wounding jasmonic acid mediated signaling pathway salicylic acid mediated signaling pathway ribose phosphate diphosphokinase activity defense response to bacterium Ubiquitin_Proteasome_system, E3 adaptor: DWD | details |
| TissueCFM000802 | photosystem calcium:proton antiporter activity calcium ion transmembrane transport photosynthesis, light reaction Ubiquitin_Proteasome_system, E3 adaptor: DWD RNA degradation | details |
| TissueCFM000806 | calcium ion transmembrane transport calcium:proton antiporter activity Ubiquitin_Proteasome_system, E3 adaptor: DWD RNA degradation | details |
| TissueCFM001335 | RNA degradation Oxidative phosphorylation vinorine synthase activity aerobic respiration I (cytochrome c) alkaloid metabolic process spliceosomal complex assembly electron transport chain mitochondrial electron transport, NADH to ubiquinone cytochrome-c oxidase activity U4/U6 x U5 tri-snRNP complex U5 snRNP spliceosomal complex hydrogen ion transmembrane transport NADH dehydrogenase (ubiquinone) activity copper ion binding respiratory chain | details |
| TissueCFM001429 | coenzyme A biosynthesis I protein homotrimerization regulation of cell growth phosphopantothenoylcysteine decarboxylase activity Pantothenate and CoA biosynthesis response to salt stress FMN binding Transcription_related, Transcription factor: C2H2 | details |
Expression profiles
 Show details about module gene expression profiling |