TissueCFM000789's detailed annotation
|
Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| PRPP biosynthesis I | 0.000886394 | plantCyc |
| plasmodesma | 0.004625552 | GO:0009506 |
| cytosol | 0.011673277 | GO:0005829 |
| cytoplasmic mRNA processing body | 0.011673277 | GO:0000932 |
| plasma membrane | 0.011673277 | GO:0005886 |
| sugar mediated signaling pathway | 0.011773572 | GO:0010182 |
| nucleotide biosynthetic process | 0.011773572 | GO:0009165 |
| nucleoside metabolic process | 0.011773572 | GO:0009116 |
| long-day photoperiodism | 0.011773572 | GO:0048571 |
| nuclear-transcribed mRNA catabolic process, nonsense-mediated decay | 0.011773572 | GO:0000184 |
| response to wounding | 0.014711529 | GO:0009611 |
| jasmonic acid mediated signaling pathway | 0.01910945 | GO:0009867 |
| salicylic acid mediated signaling pathway | 0.01910945 | GO:0009863 |
| ribose phosphate diphosphokinase activity | 0.025962193 | GO:0004749 |
| defense response to bacterium | 0.030008095 | GO:0042742 |
| Ubiquitin_Proteasome_system, E3 adaptor: DWD | 0.035293061 | ubs family |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T010618 | AT1G10700 (2.00E-129) | PRS3|phosphoribosyl pyrophosphate (PRPP) synthase 3 |
| CRO_T019150 | AT2G27590 (4.00E-100) | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein |
| CRO_T025791 | AT5G47010 (0) | LBA1|LOW-LEVEL BETA-AMYLASE 1 |
| CRO_T026911 | AT3G63460 (0) | SEC31B|transducin family protein / WD-40 repeat family protein |
| CRO_T028296 | AT5G12410 (6.00E-110) | THUMP domain-containing protein |
| CRO_T032730 | AT5G16920 (5.00E-04) | Fasciclin-like arabinogalactan family protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000152 | histone exchange regulation of developmental growth regulation of histone deacetylation Notch signaling pathway tryptophanyl-tRNA aminoacylation Swr1 complex proton-transporting two-sector ATPase complex, catalytic domain Golgi-associated vesicle hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Protein_kinases_phosphatases, PPC:1.11.1: Legume Lectin Domain Kinase | details |
| TissueCFM000177 | histone exchange regulation of developmental growth regulation of histone deacetylation proton-transporting two-sector ATPase complex, catalytic domain Swr1 complex ATPase activity, coupled to transmembrane movement of ions, rotational mechanism histone deacetylase binding nucleosome binding U5 snRNP U4/U6 x U5 tri-snRNP complex cation-transporting ATPase activity ATP biosynthetic process spliceosomal complex assembly regulation of flower development spliceosomal complex hydrogen ion transmembrane transporter activity defense response to bacterium intracellular part identical protein binding hydrogen ion transmembrane transport Ubiquitin_Proteasome_system, E3 adaptor: DWD | details |
| TissueCFM000209 | biotin biosynthesis from 8-amino-7-oxononanoate I | details |
| TissueCFM000357 | transcription from RNA polymerase I promoter ncRNA processing RNA polymerase I activity DNA-directed RNA polymerase I complex Ubiquitin_Proteasome_system, E3 adaptor: DWD | details |
| TissueCFM000428 | oxidation-reduction process malate metabolic process gluconeogenesis I malate dehydrogenase (decarboxylating) (NAD+) activity FAD binding cobalt ion binding secondary metabolite biosynthetic process Ubiquitin_Proteasome_system, E3 adaptor: DWD | details |
| TissueCFM000557 | regulation of transcription elongation from RNA polymerase II promoter positive regulation of cell proliferation Herpes simplex infection Ubiquitin_Proteasome_system, E3 adaptor: DWD RNA binding | details |
| TissueCFM000802 | photosystem calcium:proton antiporter activity calcium ion transmembrane transport photosynthesis, light reaction Ubiquitin_Proteasome_system, E3 adaptor: DWD RNA degradation | details |
| TissueCFM000806 | calcium ion transmembrane transport calcium:proton antiporter activity Ubiquitin_Proteasome_system, E3 adaptor: DWD RNA degradation | details |
| TissueCFM001429 | coenzyme A biosynthesis I protein homotrimerization regulation of cell growth phosphopantothenoylcysteine decarboxylase activity Pantothenate and CoA biosynthesis response to salt stress FMN binding Transcription_related, Transcription factor: C2H2 | details |
| TissueCFM001698 | lysophospholipase activity palmitoyl-(protein) hydrolase activity long-day photoperiodism protein depalmitoylation nuclear-transcribed mRNA catabolic process, nonsense-mediated decay benzoate biosynthesis I (CoA-dependent, β-oxidative) sugar mediated signaling pathway response to wounding jasmonic acid mediated signaling pathway salicylic acid mediated signaling pathway Glycerophospholipid metabolism defense response to bacterium zinc ion binding helicase activity Ubiquitin_Proteasome_system, E3 adaptor: DWD cell redox homeostasis vesicle-mediated transport RNA transport | details |
Expression profiles
 Show details about module gene expression profiling |