TissueCFM000209's detailed annotation
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| biotin biosynthesis from 8-amino-7-oxononanoate I | 0.01987774 | plantCyc |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000254 | AT4G14990 (9.00E-157) | Topoisomerase II-associated protein PAT1 |
| CRO_T000438 | - | - |
| CRO_T000560 | AT1G64255 (1.00E-05) | MuDR family transposase |
| CRO_T000686 | AT1G01080 (3.00E-07) | RNA-binding (RRM/RBD/RNP motifs) family protein |
| CRO_T000695 | AT1G30825 (9.00E-36) | ARPC2A|ACTIN-RELATED PROTEIN C2A; DIS2|DISTORTED TRICHOMES 2 |
| CRO_T000818 | - | - |
| CRO_T002188 | - | - |
| CRO_T002334 | - | - |
| CRO_T002517 | - | - |
| CRO_T003883 | - | - |
| CRO_T004050 | - | - |
| CRO_T004308 | - | - |
| CRO_T004542 | - | - |
| CRO_T004921 | - | - |
| CRO_T005056 | - | - |
| CRO_T005353 | - | - |
| CRO_T006040 | - | - |
| CRO_T006221 | AT2G22800 (0.000000001) | HAT9|Homeobox-leucine zipper protein family |
| CRO_T006561 | - | - |
| CRO_T006900 | AT2G35680 (7.00E-30) | Phosphotyrosine protein phosphatases superfamily protein |
| CRO_T007213 | - | - |
| CRO_T007547 | AT1G48820 (3.00E-07) | Terpenoid cyclases/Protein prenyltransferases superfamily protein |
| CRO_T007820 | - | - |
| CRO_T008183 | - | - |
| CRO_T008257 | - | - |
| CRO_T008443 | AT1G63120 (2.00E-29) | ATRBL2|RHOMBOID-like 2 |
| CRO_T009464 | - | - |
| CRO_T009543 | - | - |
| CRO_T009643 | - | - |
| CRO_T009745 | - | - |
| CRO_T010688 | - | - |
| CRO_T010727 | - | - |
| CRO_T010962 | - | - |
| CRO_T011542 | - | - |
| CRO_T012079 | - | - |
| CRO_T012664 | - | - |
| CRO_T012826 | - | - |
| CRO_T013102 | - | - |
| CRO_T014282 | - | - |
| CRO_T015828 | - | - |
| CRO_T015857 | - | - |
| CRO_T015901 | - | - |
| CRO_T016229 | - | - |
| CRO_T016705 | - | - |
| CRO_T017346 | - | - |
| CRO_T017924 | - | - |
| CRO_T018914 | AT4G13780 (0) | methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative |
| CRO_T019286 | - | - |
| CRO_T019585 | - | - |
| CRO_T020104 | - | - |
| CRO_T020140 | - | - |
| CRO_T020227 | - | - |
| CRO_T020239 | - | - |
| CRO_T020490 | - | - |
| CRO_T020577 | AT1G49920 (2.00E-11) | MuDR family transposase |
| CRO_T020762 | - | - |
| CRO_T020990 | - | - |
| CRO_T021405 | - | - |
| CRO_T021462 | - | - |
| CRO_T021465 | - | - |
| CRO_T021594 | - | - |
| CRO_T021947 | - | - |
| CRO_T022858 | - | - |
| CRO_T023224 | - | - |
| CRO_T023514 | AT2G32480 (6.00E-09) | ARASP|ARABIDOPSIS SERIN PROTEASE |
| CRO_T023763 | - | - |
| CRO_T024092 | - | - |
| CRO_T024602 | - | - |
| CRO_T025188 | - | - |
| CRO_T026367 | - | - |
| CRO_T026595 | - | - |
| CRO_T026911 | AT3G63460 (0) | SEC31B|transducin family protein / WD-40 repeat family protein |
| CRO_T026942 | - | - |
| CRO_T026980 | AT3G48675 (3.00E-13) | Protein of unknown function (DUF1278) |
| CRO_T027295 | - | - |
| CRO_T028138 | AT2G43360 (9.00E-123) | BIO2|BIOTIN AUXOTROPH 2; BIOB|BIOTIN AUXOTROPH B |
| CRO_T028994 | - | - |
| CRO_T029129 | - | - |
| CRO_T029490 | - | - |
| CRO_T030644 | AT1G64710 (1.00E-26) | GroES-like zinc-binding dehydrogenase family protein |
| CRO_T030773 | AT3G18860 (0) | transducin family protein / WD-40 repeat family protein |
| CRO_T031035 | - | - |
| CRO_T031593 | - | - |
| CRO_T033502 | - | - |
| CRO_T033667 | - | - |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000025 | biotin biosynthesis from 8-amino-7-oxononanoate I Biotin metabolism Selenocompound metabolism methionyl-tRNA aminoacylation biotin biosynthetic process biotin synthase activity methionine-tRNA ligase activity Transcription_related, Transcription factor: MYB glucose import proton transport glucose transmembrane transport tRNA binding 4 iron, 4 sulfur cluster binding 2 iron, 2 sulfur cluster binding glucose transmembrane transporter activity sugar:proton symporter activity | details |
| TissueCFM000048 | details | |
| TissueCFM000052 | biotin biosynthesis from 8-amino-7-oxononanoate I methionyl-tRNA aminoacylation biotin biosynthetic process Biotin metabolism Selenocompound metabolism biotin synthase activity methionine-tRNA ligase activity tRNA binding RNA degradation | details |
| TissueCFM000108 | lysyl-tRNA aminoacylation plasmodesma lysine-tRNA ligase activity single-organism metabolic process phosphatidylcholine acyl editing phospholipases phospholipid remodeling (phosphatidylcholine, yeast) cytosol Peroxisome Aminoacyl-tRNA biosynthesis Ubiquitin_Proteasome_system, E3 adaptor: DWD | details |
| TissueCFM000113 | details | |
| TissueCFM000131 | Transcription_related, Transcription factor: HB | details |
| TissueCFM000152 | histone exchange regulation of developmental growth regulation of histone deacetylation Notch signaling pathway tryptophanyl-tRNA aminoacylation Swr1 complex proton-transporting two-sector ATPase complex, catalytic domain Golgi-associated vesicle hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Protein_kinases_phosphatases, PPC:1.11.1: Legume Lectin Domain Kinase | details |
| TissueCFM000177 | histone exchange regulation of developmental growth regulation of histone deacetylation proton-transporting two-sector ATPase complex, catalytic domain Swr1 complex ATPase activity, coupled to transmembrane movement of ions, rotational mechanism histone deacetylase binding nucleosome binding U5 snRNP U4/U6 x U5 tri-snRNP complex cation-transporting ATPase activity ATP biosynthetic process spliceosomal complex assembly regulation of flower development spliceosomal complex hydrogen ion transmembrane transporter activity defense response to bacterium intracellular part identical protein binding hydrogen ion transmembrane transport Ubiquitin_Proteasome_system, E3 adaptor: DWD | details |
| TissueCFM000227 | Protein processing in endoplasmic reticulum | details |
| TissueCFM000288 | protein localization to cell surface attachment of GPI anchor to protein GPI-anchor transamidase complex GPI-anchor transamidase activity Glycosylphosphatidylinositol(GPI)-anchor biosynthesis RNA degradation peptidase activity | details |
| TissueCFM000294 | details | |
| TissueCFM000295 | formation of glycosidic bonds, GlycosylTransferases: GTnc dolichyl-diphosphooligosaccharide-protein glycotransferase activity oligosaccharyltransferase complex protein N-linked glycosylation via asparagine post-translational protein modification N-Glycan biosynthesis | details |
| TissueCFM000340 | methionyl-tRNA aminoacylation methionine-tRNA ligase activity Selenocompound metabolism tRNA binding | details |
| TissueCFM000356 | chromoplast stroma Glycerophospholipid metabolism phosphatidylcholine acyl editing phospholipases lipid metabolic process | details |
| TissueCFM000357 | transcription from RNA polymerase I promoter ncRNA processing RNA polymerase I activity DNA-directed RNA polymerase I complex Ubiquitin_Proteasome_system, E3 adaptor: DWD | details |
| TissueCFM000369 | hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc | details |
| TissueCFM000419 | biotin biosynthesis from 8-amino-7-oxononanoate I thiamine diphosphate biosynthesis IV (eukaryotes) methionyl-tRNA aminoacylation thiamine metabolic process thiamine diphosphate biosynthetic process Biotin metabolism Selenocompound metabolism biotin synthase activity thiamine diphosphokinase activity NEDD8-specific protease activity methionine-tRNA ligase activity thiamine binding biotin biosynthetic process Thiamine metabolism malate transmembrane transport Transcription_related, Transcription factor: NF-YC Ubiquitin_Proteasome_system, DUB: ULP tRNA binding malate transmembrane transporter activity plant-type vacuole membrane Transcription_related, Transcription factor: bHLH 2 iron, 2 sulfur cluster binding 4 iron, 4 sulfur cluster binding zinc ion binding | details |
| TissueCFM000428 | oxidation-reduction process malate metabolic process gluconeogenesis I malate dehydrogenase (decarboxylating) (NAD+) activity FAD binding cobalt ion binding secondary metabolite biosynthetic process Ubiquitin_Proteasome_system, E3 adaptor: DWD | details |
| TissueCFM000466 | biotin biosynthesis from 8-amino-7-oxononanoate I Biotin metabolism biotin synthase activity methylated histone binding biotin biosynthetic process cullin deneddylation SNARE interactions in vesicular transport iron-sulfur cluster assembly COP9 signalosome intracellular ribonucleoprotein complex viral nucleocapsid 2 iron, 2 sulfur cluster binding iron-sulfur cluster binding zinc ion binding 4 iron, 4 sulfur cluster binding vesicle-mediated transport | details |
| TissueCFM000524 | centromere complex assembly lysine biosynthetic process via aminoadipic acid acyl carrier protein metabolism biotin biosynthesis from 8-amino-7-oxononanoate I kinetochore biotin biosynthetic process Biotin metabolism Pantothenate and CoA biosynthesis PPAR signaling pathway biotin synthase activity holo-[acyl-carrier-protein] synthase activity anaphase-promoting complex binding ubiquitin-protein transferase activator activity regulation of catalytic activity zinc ion binding 2 iron, 2 sulfur cluster binding 4 iron, 4 sulfur cluster binding Ubiquitin mediated proteolysis Ubiquitin_Proteasome_system, E3 adaptor: DWD | details |
| TissueCFM000557 | regulation of transcription elongation from RNA polymerase II promoter positive regulation of cell proliferation Herpes simplex infection Ubiquitin_Proteasome_system, E3 adaptor: DWD RNA binding | details |
| TissueCFM000698 | regulation of gene expression by genetic imprinting regulation of endosperm development cell projection morphogenesis polar nucleus chromatin silencing complex histone methylation translational elongation translation elongation factor activity Ubiquitin_Proteasome_system, E3 adaptor: DWD RNA degradation RNA transport | details |
| TissueCFM000699 | pantoate-beta-alanine ligase activity phosphopantothenate biosynthesis I beta-Alanine metabolism pantothenate biosynthetic process proton-transporting ATP synthase complex assembly regulation of endosperm development regulation of gene expression by genetic imprinting histone methylation chromatin silencing complex polar nucleus RNA degradation Ubiquitin_Proteasome_system, E3 adaptor: DWD | details |
| TissueCFM000789 | PRPP biosynthesis I plasmodesma cytosol cytoplasmic mRNA processing body plasma membrane sugar mediated signaling pathway nucleotide biosynthetic process nucleoside metabolic process long-day photoperiodism nuclear-transcribed mRNA catabolic process, nonsense-mediated decay response to wounding jasmonic acid mediated signaling pathway salicylic acid mediated signaling pathway ribose phosphate diphosphokinase activity defense response to bacterium Ubiquitin_Proteasome_system, E3 adaptor: DWD | details |
| TissueCFM000802 | photosystem calcium:proton antiporter activity calcium ion transmembrane transport photosynthesis, light reaction Ubiquitin_Proteasome_system, E3 adaptor: DWD RNA degradation | details |
| TissueCFM000806 | calcium ion transmembrane transport calcium:proton antiporter activity Ubiquitin_Proteasome_system, E3 adaptor: DWD RNA degradation | details |
| TissueCFM000815 | biotin biosynthesis from 8-amino-7-oxononanoate I Biotin metabolism biotin biosynthetic process cullin deneddylation COP9 signalosome Arginine and proline metabolism biotin synthase activity L-ascorbic acid binding 2 iron, 2 sulfur cluster binding 4 iron, 4 sulfur cluster binding | details |
| TissueCFM000959 | chromoplast stroma | details |
| TissueCFM001062 | formation of glycosidic bonds, GlycosylTransferases: GTnc methionyl-tRNA aminoacylation lysyl-tRNA aminoacylation post-translational protein modification vindoline and vinblastine biosynthesis maturation of SSU-rRNA protein N-linked glycosylation via asparagine lysine-tRNA ligase activity methionine-tRNA ligase activity Selenocompound metabolism dolichyl-diphosphooligosaccharide-protein glycotransferase activity small nucleolar ribonucleoprotein complex oligosaccharyltransferase complex Mpp10 complex tRNA binding Transcription_related, Transcription factor: ERF Aminoacyl-tRNA biosynthesis N-Glycan biosynthesis Ribosome biogenesis in eukaryotes viral nucleocapsid | details |
| TissueCFM001090 | lysyl-tRNA aminoacylation borate transmembrane transport methionyl-tRNA aminoacylation Selenocompound metabolism lysine-tRNA ligase activity borate transmembrane transporter activity methionine-tRNA ligase activity tRNA binding Aminoacyl-tRNA biosynthesis ubiquitin-dependent protein catabolic process | details |
| TissueCFM001224 | protein demethylation purine nucleobase catabolic process ureide catabolic process allantoin catabolic process allantoin degradation to glyoxylate II allantoin degradation to ureidoglycolate II (ammonia producing) urate degradation to allantoin I protein homooligomerization molybdenum cofactor biosynthesis ureidoglycine aminohydrolase activity formation of glycosidic bonds, GlycosylTransferases: GTnc carboxylic ester hydrolase activity | details |
| TissueCFM001260 | Selenocompound metabolism methionyl-tRNA aminoacylation | details |
| TissueCFM001335 | RNA degradation Oxidative phosphorylation vinorine synthase activity aerobic respiration I (cytochrome c) alkaloid metabolic process spliceosomal complex assembly electron transport chain mitochondrial electron transport, NADH to ubiquinone cytochrome-c oxidase activity U4/U6 x U5 tri-snRNP complex U5 snRNP spliceosomal complex hydrogen ion transmembrane transport NADH dehydrogenase (ubiquinone) activity copper ion binding respiratory chain | details |
| TissueCFM001429 | coenzyme A biosynthesis I protein homotrimerization regulation of cell growth phosphopantothenoylcysteine decarboxylase activity Pantothenate and CoA biosynthesis response to salt stress FMN binding Transcription_related, Transcription factor: C2H2 | details |
| TissueCFM001460 | megagametogenesis Photosynthesis | details |
| TissueCFM001476 | urate degradation to allantoin I formation of glycosidic bonds, GlycosylTransferases: GTnc regulation of translational initiation formation of translation preinitiation complex cell wall organization or biogenesis | details |
| TissueCFM001477 | urate degradation to allantoin I formation of glycosidic bonds, GlycosylTransferases: GTnc glycosaminoglycan biosynthetic process protein homooligomerization heparan sulfate proteoglycan biosynthetic process glucuronyl-galactosyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity glucuronosyl-N-acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity Lysosome regulation of translational initiation formation of translation preinitiation complex eukaryotic 48S preinitiation complex eukaryotic 43S preinitiation complex clathrin adaptor complex eukaryotic translation initiation factor 3 complex vesicle-mediated transport RNA transport translation initiation factor activity heterocyclic compound binding organic cyclic compound binding | details |
Expression profiles
 Show details about module gene expression profiling |