TissueCFM000420's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| peptidyl-arginine methylation | 0.008654064 | GO:0018216 |
| FAD metabolic process | 0.008654064 | GO:0046443 |
| response to high light intensity | 0.008654064 | GO:0009644 |
| Riboflavin metabolism | 0.009033204 | KEGG pathway |
| diaminohydroxyphosphoribosylaminopyrimidine deaminase activity | 0.014659108 | GO:0008835 |
| 5-amino-6-(5-phosphoribosylamino)uracil reductase activity | 0.014659108 | GO:0008703 |
| riboflavin biosynthetic process | 0.015569261 | GO:0009231 |
| pyruvate kinase activity | 0.015870142 | GO:0004743 |
| histone-arginine N-methyltransferase activity | 0.015870142 | GO:0008469 |
| potassium ion binding | 0.015870142 | GO:0030955 |
| protein-arginine omega-N asymmetric methyltransferase activity | 0.015870142 | GO:0035242 |
| RNA modification | 0.017638645 | GO:0009451 |
| flavin biosynthesis I (bacteria and plants) | 0.019505234 | plantCyc |
| glycolysis I (from glucose 6-phosphate) | 0.019505234 | plantCyc |
| glycolysis IV (plant cytosol) | 0.019505234 | plantCyc |
| Rubisco shunt | 0.019505234 | plantCyc |
| chloroplast | 0.022577211 | GO:0009507 |
| chloroplast organization | 0.027380932 | GO:0009658 |
| glycolytic process | 0.027380932 | GO:0006096 |
| NADP binding | 0.048016406 | GO:0050661 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000921 | AT1G32440 (9.00E-70) | PKp3|plastidial pyruvate kinase 3 |
| CRO_T004533 | AT4G16570 (2.00E-43) | ATPRMT7|PROTEIN ARGININE METHYLTRANSFERASE 7 |
| CRO_T017718 | AT3G47390 (7.00E-168) | PHS1|PHOTOSENSITIVE 1; PyrR|pyrimidine reductase |
| CRO_T017896 | AT1G31130 (2.00E-103) | unknown protein |
| CRO_T026748 | AT5G65700 (3.00E-114) | BAM1|BARELY ANY MERISTEM 1 |
| CRO_T027861 | - | - |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM001332 | nuclear nucleosome Viral carcinogenesis triacylglycerol degradation chaperone-mediated protein folding nucleosome assembly protein peptidyl-prolyl isomerization endoplasmic reticulum membrane lipid metabolic process | details |
| TissueCFM001470 | Phagosome microtubule-based process structural constituent of cytoskeleton microtubule GTPase activity GTP binding glycolysis I (from glucose 6-phosphate) glycolysis IV (plant cytosol) Rubisco shunt Ubiquitin_Proteasome_system, E3: U-box potassium ion binding pyruvate kinase activity cytoplasm glycolytic process | details |
| TissueCFM001645 | Phagosome microtubule-based process structural constituent of cytoskeleton microtubule cytoplasm GTP binding 1-acyl-2-lysophosphatidylserine acylhydrolase activity GTPase activity 5-amino-6-(5-phosphoribosylamino)uracil reductase activity phosphatidylserine 1-acylhydrolase activity phosphatidylcholine 1-acylhydrolase activity diaminohydroxyphosphoribosylaminopyrimidine deaminase activity FAD metabolic process response to high light intensity Riboflavin metabolism potassium ion binding pyruvate kinase activity riboflavin biosynthetic process RNA modification chloroplast chloroplast organization glycolytic process flavin biosynthesis I (bacteria and plants) glycolysis I (from glucose 6-phosphate) glycolysis IV (plant cytosol) phosphatidylcholine acyl editing phospholipases Rubisco shunt triacylglycerol degradation NADP binding | details |
| TissueCFM001824 | Transcription_related, Transcription regulator: SWI/SNF-SWI3 cytoplasmic ubiquitin ligase complex uracil phosphoribosyltransferase activity beta-ketoacyl-acyl-carrier-protein synthase III activity Atg8 ligase activity 3-oxoacyl-[acyl-carrier-protein] synthase activity histone H3-K4 methylation nucleophagy pyrimidine nucleoside salvage UMP biosynthetic process uracil salvage mitophagy pyrimidine nucleobases salvage I superpathway of pyrimidine nucleobases salvage superpathway of pyrimidine ribonucleosides salvage autophagosome assembly fatty acid biosynthesis initiation I spermine and spermidine degradation III pyrimidine salvage pathway uridine kinase activity potassium ion binding pyruvate kinase activity chloroplast cytosol Rubisco shunt glycolysis IV (plant cytosol) Autophagy - animal Pyrimidine metabolism glycolysis I (from glucose 6-phosphate) glycolytic process Fatty acid metabolism protein transport fatty acid biosynthetic process | details |
| TissueCFM001831 | nucleolus nucleosome assembly nucleosome barrier septum site selection protein targeting to nuclear inner membrane regulation of endosperm development nuclear pore central transport channel nuclear pore organization Ubiquitin_Proteasome_system, E3: HECT chloroplast fission triacylglycerol degradation calcium-dependent ATPase activity NLS-bearing protein import into nucleus Viral carcinogenesis structural constituent of nuclear pore nucleocytoplasmic transporter activity response to water deprivation | details |
| TissueCFM001833 | Phagosome regulation of endosperm development triacylglycerol degradation nucleosome assembly microtubule-based process lipid metabolic process | details |
Expression profiles
 Show details about module gene expression profiling |