TissueCFM001332's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| nuclear nucleosome | 0.003190782 | GO:0000788 |
| Viral carcinogenesis | 0.004248721 | KEGG pathway |
| triacylglycerol degradation | 0.012876498 | plantCyc |
| chaperone-mediated protein folding | 0.02223531 | GO:0061077 |
| nucleosome assembly | 0.02223531 | GO:0006334 |
| protein peptidyl-prolyl isomerization | 0.022888805 | GO:0000413 |
| endoplasmic reticulum membrane | 0.031117503 | GO:0005789 |
| lipid metabolic process | 0.038754009 | GO:0006629 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T007796 | AT3G29280 (3.00E-60) | unknown protein |
| CRO_T010054 | AT4G16580 (9.00E-154) | Protein phosphatase 2C family protein |
| CRO_T016991 | AT2G28720 (9.00E-48) | Histone superfamily protein |
| CRO_T017745 | AT3G55520 (7.00E-14) | FKBP-like peptidyl-prolyl cis-trans isomerase family protein |
| CRO_T026214 | - | - |
| CRO_T026748 | AT5G65700 (3.00E-114) | BAM1|BARELY ANY MERISTEM 1 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000420 | peptidyl-arginine methylation FAD metabolic process response to high light intensity Riboflavin metabolism diaminohydroxyphosphoribosylaminopyrimidine deaminase activity 5-amino-6-(5-phosphoribosylamino)uracil reductase activity riboflavin biosynthetic process pyruvate kinase activity histone-arginine N-methyltransferase activity potassium ion binding protein-arginine omega-N asymmetric methyltransferase activity RNA modification flavin biosynthesis I (bacteria and plants) glycolysis I (from glucose 6-phosphate) glycolysis IV (plant cytosol) Rubisco shunt chloroplast chloroplast organization glycolytic process NADP binding | details |
| TissueCFM001132 | alpha-1,4-glucan synthase activity starch synthase activity starch biosynthesis formation of glycosidic bonds, GlycosylTransferases: GTnc Transcription_related, Transcription factor: CPP amylopectin biosynthetic process glycogen (starch) synthase activity starch biosynthetic process Transcription_related, Transcription factor: LOB amyloplast Starch and sucrose metabolism methyltransferase activity | details |
| TissueCFM001331 | formaldehyde oxidation II (glutathione-dependent) formaldehyde catabolic process S-formylglutathione hydrolase activity nuclear nucleosome Viral carcinogenesis chaperone-mediated protein folding nucleosome assembly protein peptidyl-prolyl isomerization triacylglycerol degradation carboxylic ester hydrolase activity FK506 binding lipid metabolic process peptidyl-prolyl cis-trans isomerase activity | details |
| TissueCFM001831 | nucleolus nucleosome assembly nucleosome barrier septum site selection protein targeting to nuclear inner membrane regulation of endosperm development nuclear pore central transport channel nuclear pore organization Ubiquitin_Proteasome_system, E3: HECT chloroplast fission triacylglycerol degradation calcium-dependent ATPase activity NLS-bearing protein import into nucleus Viral carcinogenesis structural constituent of nuclear pore nucleocytoplasmic transporter activity response to water deprivation | details |
| TissueCFM001833 | Phagosome regulation of endosperm development triacylglycerol degradation nucleosome assembly microtubule-based process lipid metabolic process | details |
Expression profiles
 Show details about module gene expression profiling |