TissueCFM001470's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Phagosome | 1.57E-05 | KEGG pathway |
| microtubule-based process | 8.78E-05 | GO:0007017 |
| structural constituent of cytoskeleton | 0.000285097 | GO:0005200 |
| microtubule | 0.000538039 | GO:0005874 |
| GTPase activity | 0.004093588 | GO:0003924 |
| GTP binding | 0.008237633 | GO:0005525 |
| glycolysis I (from glucose 6-phosphate) | 0.020009415 | plantCyc |
| glycolysis IV (plant cytosol) | 0.020009415 | plantCyc |
| Rubisco shunt | 0.020009415 | plantCyc |
| Ubiquitin_Proteasome_system, E3: U-box | 0.022132196 | ubs family |
| potassium ion binding | 0.02445966 | GO:0030955 |
| pyruvate kinase activity | 0.02445966 | GO:0004743 |
| cytoplasm | 0.034041583 | GO:0005737 |
| glycolytic process | 0.0435556 | GO:0006096 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000460 | AT1G26310 (9.00E-08) | AGL10|AGAMOUS-like 10; CAL|CAULIFLOWER |
| CRO_T000921 | AT1G32440 (9.00E-70) | PKp3|plastidial pyruvate kinase 3 |
| CRO_T010800 | AT5G61900 (2.00E-18) | BON1|BONZAI 1; CPN1|COPINE 1 |
| CRO_T020543 | AT2G42810 (1.00E-12) | AtPP5|protein phosphatase 5; PAPP5|Phytochrome-Associated Protein Phosphatase 5; PP5.2|protein phosphatase 5.2 |
| CRO_T024330 | AT5G05620 (3.00E-41) | ATGCP2|GAMMA-TUBULIN COMPLEX PROTEIN 2; TUBG2|GAMMA-TUBULIN 2 |
| CRO_T028425 | AT1G55365 (2.00E-11) | unknown protein |
| CRO_T028617 | AT5G05620 (5.00E-35) | ATGCP2|GAMMA-TUBULIN COMPLEX PROTEIN 2; TUBG2|GAMMA-TUBULIN 2 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000352 | serine family amino acid biosynthetic process formate catabolic process Hedgehog signaling pathway transferase activity, transferring phosphorus-containing groups phosphoglycerate dehydrogenase activity formate dehydrogenase (NAD+) activity Transcription_related, Transcription factor: NF-YC Transcription_related, Transcription factor: Orphans Ubiquitin_Proteasome_system, E3 adaptor: BTB signal transduction NAD binding protein heterodimerization activity | details |
| TissueCFM000420 | peptidyl-arginine methylation FAD metabolic process response to high light intensity Riboflavin metabolism diaminohydroxyphosphoribosylaminopyrimidine deaminase activity 5-amino-6-(5-phosphoribosylamino)uracil reductase activity riboflavin biosynthetic process pyruvate kinase activity histone-arginine N-methyltransferase activity potassium ion binding protein-arginine omega-N asymmetric methyltransferase activity RNA modification flavin biosynthesis I (bacteria and plants) glycolysis I (from glucose 6-phosphate) glycolysis IV (plant cytosol) Rubisco shunt chloroplast chloroplast organization glycolytic process NADP binding | details |
| TissueCFM001152 | Transcription_related, Transcription factor: NF-YC transferase activity, transferring phosphorus-containing groups Golgi to vacuole transport endosome to lysosome transport auxin homeostasis vesicle organization positive gravitropism Transcription_related, Transcription factor: Orphans retromer complex multivesicular body late endosome membrane Endocytosis protein targeting to vacuole phosphatidylinositol binding extrinsic component of membrane root development protein binding protein heterodimerization activity | details |
| TissueCFM001469 | Protein processing in endoplasmic reticulum xylogalacturonan biosynthesis glycerone kinase activity glycerol metabolic process developmental process response to UV-B endoplasmic reticulum lumen Ubiquitin_Proteasome_system, E3: U-box | details |
| TissueCFM001494 | p53 signaling pathway Transcription_related, Transcription factor: NF-YC protein heterodimerization activity | details |
| TissueCFM001623 | Transcription_related, Transcription regulator: LUG Phagosome Golgi organization microtubule-based process mRNA surveillance pathway structural constituent of cytoskeleton | details |
| TissueCFM001645 | Phagosome microtubule-based process structural constituent of cytoskeleton microtubule cytoplasm GTP binding 1-acyl-2-lysophosphatidylserine acylhydrolase activity GTPase activity 5-amino-6-(5-phosphoribosylamino)uracil reductase activity phosphatidylserine 1-acylhydrolase activity phosphatidylcholine 1-acylhydrolase activity diaminohydroxyphosphoribosylaminopyrimidine deaminase activity FAD metabolic process response to high light intensity Riboflavin metabolism potassium ion binding pyruvate kinase activity riboflavin biosynthetic process RNA modification chloroplast chloroplast organization glycolytic process flavin biosynthesis I (bacteria and plants) glycolysis I (from glucose 6-phosphate) glycolysis IV (plant cytosol) phosphatidylcholine acyl editing phospholipases Rubisco shunt triacylglycerol degradation NADP binding | details |
| TissueCFM001687 | Phagosome microtubule-based process Transcription_related, Transcription factor: C2H2 microtubule integral component of membrane structural constituent of cytoskeleton | details |
| TissueCFM001700 | cytosolic large ribosomal subunit nuclear pore central transport channel Ribosome translation nuclear pore organization protein targeting to nuclear inner membrane NLS-bearing protein import into nucleus nucleocytoplasmic transporter activity structural constituent of nuclear pore structural constituent of ribosome nucleolus RNA transport | details |
| TissueCFM001770 | Phagosome Proteasome positive regulation of RNA polymerase II transcriptional preinitiation complex assembly ER-associated ubiquitin-dependent protein catabolic process positive regulation of proteasomal protein catabolic process microtubule-based process adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc proteasome regulatory particle, base subcomplex cytosolic proteasome complex nuclear proteasome complex structural constituent of cytoskeleton TBP-class protein binding proteasome-activating ATPase activity microtubule | details |
| TissueCFM001824 | Transcription_related, Transcription regulator: SWI/SNF-SWI3 cytoplasmic ubiquitin ligase complex uracil phosphoribosyltransferase activity beta-ketoacyl-acyl-carrier-protein synthase III activity Atg8 ligase activity 3-oxoacyl-[acyl-carrier-protein] synthase activity histone H3-K4 methylation nucleophagy pyrimidine nucleoside salvage UMP biosynthetic process uracil salvage mitophagy pyrimidine nucleobases salvage I superpathway of pyrimidine nucleobases salvage superpathway of pyrimidine ribonucleosides salvage autophagosome assembly fatty acid biosynthesis initiation I spermine and spermidine degradation III pyrimidine salvage pathway uridine kinase activity potassium ion binding pyruvate kinase activity chloroplast cytosol Rubisco shunt glycolysis IV (plant cytosol) Autophagy - animal Pyrimidine metabolism glycolysis I (from glucose 6-phosphate) glycolytic process Fatty acid metabolism protein transport fatty acid biosynthetic process | details |
| TissueCFM001833 | Phagosome regulation of endosperm development triacylglycerol degradation nucleosome assembly microtubule-based process lipid metabolic process | details |
| TissueCFM001836 | Cytochrome_P450, Cytochrome P450: CYP89A serine family amino acid biosynthetic process formate catabolic process vernolate biosynthesis I poly-hydroxy fatty acids biosynthesis Transcription_related, Transcription factor: NF-YC Glycosaminoglycan degradation formate dehydrogenase (NAD+) activity phosphoglycerate dehydrogenase activity | details |
Expression profiles
 Show details about module gene expression profiling |