TissueCFM001833's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Phagosome | 0.002126245 | KEGG pathway |
| regulation of endosperm development | 0.007819149 | GO:2000014 |
| triacylglycerol degradation | 0.012876498 | plantCyc |
| nucleosome assembly | 0.018220431 | GO:0006334 |
| microtubule-based process | 0.018220431 | GO:0007017 |
| lipid metabolic process | 0.049899323 | GO:0006629 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T001331 | AT1G14900 (1.00E-16) | HMGA|high mobility group A |
| CRO_T006361 | AT5G19570 (1.00E-25) | unknown protein |
| CRO_T026214 | - | - |
| CRO_T026748 | AT5G65700 (3.00E-114) | BAM1|BARELY ANY MERISTEM 1 |
| CRO_T027861 | - | - |
| CRO_T028617 | AT5G05620 (5.00E-35) | ATGCP2|GAMMA-TUBULIN COMPLEX PROTEIN 2; TUBG2|GAMMA-TUBULIN 2 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000420 | peptidyl-arginine methylation FAD metabolic process response to high light intensity Riboflavin metabolism diaminohydroxyphosphoribosylaminopyrimidine deaminase activity 5-amino-6-(5-phosphoribosylamino)uracil reductase activity riboflavin biosynthetic process pyruvate kinase activity histone-arginine N-methyltransferase activity potassium ion binding protein-arginine omega-N asymmetric methyltransferase activity RNA modification flavin biosynthesis I (bacteria and plants) glycolysis I (from glucose 6-phosphate) glycolysis IV (plant cytosol) Rubisco shunt chloroplast chloroplast organization glycolytic process NADP binding | details |
| TissueCFM001249 | calcium-dependent ATPase activity galactonolactone dehydrogenase activity L-gulono-1,4-lactone dehydrogenase activity L-ascorbate biosynthesis I (L-galactose pathway) barrier septum site selection Ascorbate and aldarate metabolism Viral carcinogenesis D-arabinono-1,4-lactone oxidase activity chloroplast fission chloroplast envelope nucleosome assembly response to water deprivation phosphoprotein phosphatase activity protein homodimerization activity protein heterodimerization activity | details |
| TissueCFM001331 | formaldehyde oxidation II (glutathione-dependent) formaldehyde catabolic process S-formylglutathione hydrolase activity nuclear nucleosome Viral carcinogenesis chaperone-mediated protein folding nucleosome assembly protein peptidyl-prolyl isomerization triacylglycerol degradation carboxylic ester hydrolase activity FK506 binding lipid metabolic process peptidyl-prolyl cis-trans isomerase activity | details |
| TissueCFM001332 | nuclear nucleosome Viral carcinogenesis triacylglycerol degradation chaperone-mediated protein folding nucleosome assembly protein peptidyl-prolyl isomerization endoplasmic reticulum membrane lipid metabolic process | details |
| TissueCFM001343 | benzoyl-β-D-glucopyranose biosynthesis salicylate glucosides biosynthesis IV regulation of nitrogen utilization regulation of fatty acid biosynthetic process regulation of phosphorylation anthocyanin-containing compound biosynthetic process acetylglutamate kinase regulator activity Protein_kinases_phosphatases, PPC:1.11.1: Legume Lectin Domain Kinase integral component of membrane chloroplast thylakoid peptidyl-tyrosine phosphorylation regulation of catalytic activity | details |
| TissueCFM001387 | Cytochrome_P450, Cytochrome P450: CYP89A vernolate biosynthesis I L-gulono-1,4-lactone dehydrogenase activity galactonolactone dehydrogenase activity poly-hydroxy fatty acids biosynthesis L-ascorbate biosynthesis I (L-galactose pathway) D-arabinono-1,4-lactone oxidase activity Ascorbate and aldarate metabolism Transcription_related, Transcription factor: bZIP Plant hormone signal transduction | details |
| TissueCFM001470 | Phagosome microtubule-based process structural constituent of cytoskeleton microtubule GTPase activity GTP binding glycolysis I (from glucose 6-phosphate) glycolysis IV (plant cytosol) Rubisco shunt Ubiquitin_Proteasome_system, E3: U-box potassium ion binding pyruvate kinase activity cytoplasm glycolytic process | details |
| TissueCFM001631 | nucleosome regulation of endosperm development THO complex MCM complex chromatin silencing DNA replication initiation DNA duplex unwinding nucleosome assembly nuclear chromatin DNA replication origin binding Basal transcription factors DNA replication Necroptosis DNA helicase activity Aminoacyl-tRNA biosynthesis | details |
| TissueCFM001645 | Phagosome microtubule-based process structural constituent of cytoskeleton microtubule cytoplasm GTP binding 1-acyl-2-lysophosphatidylserine acylhydrolase activity GTPase activity 5-amino-6-(5-phosphoribosylamino)uracil reductase activity phosphatidylserine 1-acylhydrolase activity phosphatidylcholine 1-acylhydrolase activity diaminohydroxyphosphoribosylaminopyrimidine deaminase activity FAD metabolic process response to high light intensity Riboflavin metabolism potassium ion binding pyruvate kinase activity riboflavin biosynthetic process RNA modification chloroplast chloroplast organization glycolytic process flavin biosynthesis I (bacteria and plants) glycolysis I (from glucose 6-phosphate) glycolysis IV (plant cytosol) phosphatidylcholine acyl editing phospholipases Rubisco shunt triacylglycerol degradation NADP binding | details |
| TissueCFM001831 | nucleolus nucleosome assembly nucleosome barrier septum site selection protein targeting to nuclear inner membrane regulation of endosperm development nuclear pore central transport channel nuclear pore organization Ubiquitin_Proteasome_system, E3: HECT chloroplast fission triacylglycerol degradation calcium-dependent ATPase activity NLS-bearing protein import into nucleus Viral carcinogenesis structural constituent of nuclear pore nucleocytoplasmic transporter activity response to water deprivation | details |
Expression profiles
 Show details about module gene expression profiling |